PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0177.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 21053.5 Da PI: 7.7266 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.2 | 1.4e-18 | 4 | 132 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + F+P + el+ +yL+kk+++++ l +e+ i+ev+i+++eP +p+ ++ +++ w+ s +ra k+g Wk tgk+ Bostr.15774s0177.1.p 4 YTFNPPEYELIIKYLNKKITEEDdLGAESEINEVNICHHEPAGIPALARMpSSHTWHIIS------------RRASKTGHWKITGKSSM 80 68****************999985666666***************533221334555544............4566789********** PP NAM 92 vlskkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128 v++ +g+ +g+kk L f + + ++ +k++W++he++ Bostr.15774s0177.1.p 81 VKDVDGNIIGCKKYLGFKetkknssssssfpssSSTGRQQNKSNWIIHEFHS 132 ******************77666665555554424444455*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.598 | 1 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-12 | 4 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-21 | 4 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSTYTFNPPE YELIIKYLNK KITEEDDLGA ESEINEVNIC HHEPAGIPAL ARMPSSHTWH 60 IISRRASKTG HWKITGKSSM VKDVDGNIIG CKKYLGFKET KKNSSSSSSF PSSSSTGRQQ 120 NKSNWIIHEF HSSIQHPNKM QNDNISVNDY GGEFLGGGFE DIFPPFQSTG LLDQPYYSIT 180 SYRTWR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0177.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465303.1 | 4e-53 | PREDICTED: NAC domain-containing protein 69-like, partial | ||||
TrEMBL | A0A397XHE8 | 2e-52 | A0A397XHE8_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.15774s0177.1.p | 1e-137 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14815 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 1e-47 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0177.1.p |