PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0146.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 220aa    MW: 23837.4 Da    PI: 6.3629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1976125255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ta  Aa+a+++a+++++g
  Bostr.15774s0146.1.p  76 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAVAAARAYDEAALRFRG 125
                           59*******.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-2276135No hitNo description
PROSITE profilePS5103224.89576133IPR001471AP2/ERF domain
PfamPF008472.2E-1376125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3276134IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2276134IPR016177DNA-binding domain
SMARTSM003801.6E-3676139IPR001471AP2/ERF domain
PRINTSPR003672.3E-147788IPR001471AP2/ERF domain
PRINTSPR003672.3E-14115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSAMVSALTQ VISGRSQTEA EGAHSSSSSA GHKRGWLGID SAPIPSSFAP VDSSLGPIEE  60
STSKALPEEV REKRWRYRGV RQRPWGKWAA EIRDPHRAAR VWLGTFDTAV AAARAYDEAA  120
LRFRGSKAKL NFPEDVMLLP PPPPSPLPLH TDTVANKAEE DLMNYWSYSK LLQSSDQRSS  180
YGQGQEESSN ILEHSPVEQP LPPSSSGQSS SDFSGPSCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2277136666ATERF1
3gcc_A3e-2277136666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0146.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5803780.0AJ580378.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, clone At5g5008-like.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441531.21e-94PREDICTED: ethylene-responsive transcription factor ERF110-like, partial
SwissprotQ70II32e-93EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F51e-89A0A178U7F5_ARATH; Uncharacterized protein
TrEMBLG8IQH22e-92G8IQH2_ARATH; Ethylene response factor 110
STRINGBostr.15774s0146.1.p1e-158(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-90ethylene response factor 110