PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0100.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 288aa    MW: 32088.2 Da    PI: 6.7701
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15187223135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Bostr.15774s0100.1.p 187 CKHCGVNEsnTPAMRRGPAGPRTLCNACGLMWANKGT 223
                           ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.0E-44378IPR010399Tify domain
PROSITE profilePS5132011.5834378IPR010399Tify domain
PfamPF062006.6E-94677IPR010399Tify domain
PfamPF062037.4E-12115156IPR010402CCT domain
PROSITE profilePS5101711.667115157IPR010402CCT domain
PROSITE profilePS501149.341181238IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-11181239IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-11183232No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14185228IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.51E-14186230No hitNo description
PfamPF003202.0E-13187223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440187214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKAATNPHLL EEIEVDDEGC GSHDLMDDVY VAEQIGLEGV STRSSRTSEL TLSFEGEVFV  60
FPAVTPDKVQ TVLLLLGWRD IPTAVPTLKL PFENTGSYVL QGVGDNPRQS NLSRRLASLV  120
RFRVKRKERC FDKKIRYTVR KEVVQRMHRK NGQFASFREG SRGSNWESTQ SGLQDGTLHS  180
ETATRRCKHC GVNESNTPAM RRGPAGPRTL CNACGLMWAN KGTLRDLSKG ARNLSVSQIE  240
PKQMKIWPVI YLLECCPHST DDDDDQEPLS NLANPSDTDF DIPSSFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482249.11e-156PREDICTED: GATA transcription factor 24
SwissprotQ8GXL73e-63GAT24_ARATH; GATA transcription factor 24
TrEMBLB9SN001e-121B9SN00_RICCO; GATA transcription factor, putative
STRINGBostr.15774s0100.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-62ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]