PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0060.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 134aa    MW: 14721.9 Da    PI: 10.2949
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.3e-193366134
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                          C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  Bostr.15774s0060.1.p 33 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 66
                          ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.42E-122667No hitNo description
PROSITE profilePS5011412.4922763IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-132778IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-153167IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-123277No hitNo description
PfamPF003204.8E-173367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MLDHSEKVLV DSEAMKRRAV DMIEENNNNK KTCADCGTSK TPLWRGGPAG PKSLCNACGI  60
RNRKKRRGTE DNKKLKKSSC GGGNPKFGES LKQRFLDLGM TNRSTVEKQR RKLGEEEQAA  120
VLLMALSYGS VYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937821e-109AB493782.1 Arabidopsis thaliana At5g49300 mRNA for hypothetical protein, partial cds, clone: RAAt5g49300.
GenBankBT0293381e-109BT029338.1 Arabidopsis thaliana At5g49300 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442389.15e-78PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ102e-76GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A384KUV75e-74A0A384KUV7_ARATH; GATA16
TrEMBLC0SVS95e-74C0SVS9_ARATH; Uncharacterized protein At5g49300 (Fragment)
STRINGBostr.15774s0060.1.p8e-94(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-79GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]