PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15697s0466.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29884.3 Da PI: 8.8009 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.3 | 1.1e-21 | 11 | 130 | 20 | 127 |
NAM 20 kkkvegkkleleevikevdiykvePwdLp.k..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +k++g++ +e +i+evdi+k++Pw+L+ + k+k+++ wyfFs+r+++ +r+nr+t sg Wk t + +v+++ Bostr.15697s0466.1.p 11 PNKIQGNTWLVEGAINEVDICKFDPWNLRcNfcfcfwgiksKIKSKDCMWYFFSRRATR----DRQNRKTPSGKWKVTREPVDVKDNvg 95 57899999888889**************854899***99887777888******99765....69********************9999 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyr 127 +g+++g k+ Lvf ++ ++ +Wv+hey+ Bostr.15697s0466.1.p 96 twcgiRGKKIGHKRCLVFL--NSGNPIDPNWVIHEYH 130 999999999**********..4555669********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.674 | 1 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-22 | 12 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-10 | 48 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSSVTLSLF PNKIQGNTWL VEGAINEVDI CKFDPWNLRC NFCFCFWGIK SKIKSKDCMW 60 YFFSRRATRD RQNRKTPSGK WKVTREPVDV KDNVGTWCGI RGKKIGHKRC LVFLNSGNPI 120 DPNWVIHEYH NTVVLPEHLR TTYVICRLEY KGDDMSILSA NAIDPTPSFV ANMTNSEGHG 180 PLHNFEAQEQ QKLHLQGKEK MKNTQESECE GEMAEDSIKK TPSTKTVKQK WIFLEEISQR 240 NSQWIIIGFL LFISVIGSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15697s0466.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892089.1 | 6e-61 | NAC domain-containing protein 1 | ||||
Swissprot | Q0WV96 | 1e-52 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | D7KQC4 | 1e-59 | D7KQC4_ARALL; ANAC001 | ||||
STRING | Bostr.15697s0466.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 5e-55 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15697s0466.1.p |
Publications ? help Back to Top | |||
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