PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.15697s0445.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Trihelix

Protein Properties

Length: 392aa MW: 43123.5 Da PI: 9.6253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.15697s0445.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.5	7.4e-18	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt +e+++Liea++ ++ r r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r Bostr.15697s0445.1.p 19 WTLNETMVLIEAKKMDDGRRMRRSiglppteqqqdsrcsssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRR 107 ************666655555444555555555666666558899*************************************998 PP trihelix 72 ts 73 + Bostr.15697s0445.1.p 108 VE 109 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-12	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDGRRMR RSIGLPPTEQ QQDSRCSSSN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVEA SFAAAAESSS 120 SSAAAAETAS YWKMEKSERK ERNLPSNMLP QTYQALYEVV ESKTLPSSTA ATAVTAAVAA 180 AAAAIGSGNG SGGGQIQKVI QQGLGFVVPK VHQIIQPPPL PLPPSQPPPQ PLPRPLLLPP 240 PPPPSFHAQP ILPTKDSSSD SDTSEYSDTS PAKRRRTMPT TTAGPSGGGV EAEEARRSKR 300 DEETTVAAAL SRSVSVIANA IRESEERQDR RHKEVMNVQE RRLKIEESNV EMNREGMNGL 360 VEAINKLASS IFALASSSSA RHNNQHQGGP P*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDGRRMR RSIGLPPTEQ QQDSRCSSSN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVEA SFAAAAESSS  120
SSAAAAETAS YWKMEKSERK ERNLPSNMLP QTYQALYEVV ESKTLPSSTA ATAVTAAVAA  180
AAAAIGSGNG SGGGQIQKVI QQGLGFVVPK VHQIIQPPPL PLPPSQPPPQ PLPRPLLLPP  240
PPPPSFHAQP ILPTKDSSSD SDTSEYSDTS PAKRRRTMPT TTAGPSGGGV EAEEARRSKR  300
DEETTVAAAL SRSVSVIANA IRESEERQDR RHKEVMNVQE RRLKIEESNV EMNREGMNGL  360
VEAINKLASS IFALASSSSA RHNNQHQGGP P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.15697s0445.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT015317	0.0	BT015317.1 Arabidopsis thaliana At1g31310 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174416.2	0.0	hydroxyproline-rich glycoprotein family protein
TrEMBL	F4I9C1	0.0	F4I9C1_ARATH; Hydroxyproline-rich glycoprotein family protein
STRING	Bostr.15697s0445.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-140	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bostr.15697s0445.1.p