PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0430.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-X1
Protein Properties Length: 1107aa    MW: 121675 Da    PI: 8.1539
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.52.5e-07327344118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H+C++ CH GpC+pC
  Bostr.15697s0430.1.p 327 CGRHRCERACHVGPCDPC 344
                           ****************** PP
2zf-NF-X117.49.6e-06547565119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C+ lCH+G CppC 
  Bostr.15697s0430.1.p 547 CGQHSCETLCHTGHCPPCL 565
                           ******************6 PP
3zf-NF-X116.22.3e-05657672116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG+H C ++CH+ pC+
  Bostr.15697s0430.1.p 657 CGMHACARTCHLEPCD 672
                           ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.29E-6149219No hitNo description
PROSITE profilePS500168.823157218IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.362160216IPR001841Zinc finger, RING-type
PROSITE patternPS013590160215IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.49E-5249310No hitNo description
SMARTSM004380.023272290IPR000967Zinc finger, NF-X1-type
PfamPF014228.3274289IPR000967Zinc finger, NF-X1-type
CDDcd060087.58E-12317365No hitNo description
PfamPF014229.7E-6327344IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1E-4327346IPR000967Zinc finger, NF-X1-type
CDDcd060082.13E-6381424No hitNo description
PfamPF014221.2E-4391408IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002391410IPR000967Zinc finger, NF-X1-type
CDDcd060085.27E-12439487No hitNo description
PfamPF014220.029449466IPR000967Zinc finger, NF-X1-type
SMARTSM004380.024449468IPR000967Zinc finger, NF-X1-type
PfamPF0142218507518IPR000967Zinc finger, NF-X1-type
SMARTSM0043814507532IPR000967Zinc finger, NF-X1-type
CDDcd060086.92E-8540589No hitNo description
PfamPF014226.1E-4547564IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038547566IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-5594641No hitNo description
PfamPF01422110604621IPR000967Zinc finger, NF-X1-type
SMARTSM004380.21604622IPR000967Zinc finger, NF-X1-type
PfamPF014220.02657672IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025657688IPR000967Zinc finger, NF-X1-type
CDDcd060083.31E-5686735No hitNo description
PfamPF0142220690716IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16697718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MSSQVRRDRK ERPRFTSQTS QQTWVPRGTS STSVVVNETP FPFDANTNFG SLDASARPGP  60
VYQQRQHYEY APLLNNPHQR SNVPRPLSYS RQRRNNASRP VLDNRQRVGS RGRLPQSMNE  120
GTGLDKKRNG HNENIVLTNP NLPQLLQEIQ DKLMKGSIEC MICYDMVRWS ANIWSCSSCY  180
SIFHLNCIKK WARAPTSVDL LADKNQGSNW RCPGCQFVQL TSSKEILYRC FCGKRKDPPI  240
DPYLTPHSCG DICGKPLEKE LATAEMAKEN TCPHVCVLQC HPGPCPPCKA FAPPRNCPCG  300
KKMIRTRCSE IKSDLTCGQS CDKFLNCGRH RCERACHVGP CDPCEVQVNA SCFCKQTVES  360
VICGDMSVKG EVKAENGVFS CKLDCRKQLE CGNHYCRDVC HPGPCGDCEF LPSRVKACYC  420
GKTSLDEERR SCLDPIPSCS NICSKLLPCG PHNCNEMCHS GGCSPCLVQV SQKCQCGSTS  480
RTVECYKRVS ETENFICTKP CGRKKNCGRH RCSERCCPLL NHPKNDDMSC DSDLHFCHIP  540
CGKRLRCGQH SCETLCHTGH CPPCLEMIFT DLACACGKTS IPPPLPCGTP VPSCQLPCSV  600
PQPCGHSATH GCHFGDCIPC SVPVEKKCIG GHVVLRNIPC GLKDIRCNKI CGKTRRCGMH  660
ACARTCHLEP CDNGGNASVT GLRVTCGQTC GAPRRDCRHT CPALCHPSAP CPDQRCEFPL  720
KITCSCGRIT ATVPCDAGGS AGGFGGDSIY ETSILQKLPV ALQPDESNRN RIPLGQRKLT  780
CDEECAKLER KRVLQDAFDI TPNLNAIHFG ENSAMTEIIL DLYRGDPKWV LAVEERCKFL  840
VLGKARGSTS SSLKLHIFCT MEKDKRDAVR LIAERWKLAV SNAGWEPKRF VVVYVTQKSK  900
PPTKIIGVKG GIFAGGPHAP VFDPLVDMDP RLVVCFFDLP REANISALVL RFGGECELVW  960
LNDKNALAVF HDPVRAATAM RRLEHGSVYQ GVVVVVLNPG QSPSLSNAWG IPGSSVQRGN  1020
PWNKAVIKES DDSWGTEDSP IGGSMWKSAK DNALITPLVN RWSVLESDKA VSVEPLAQTE  1080
GTSSSKAVGK QPEETAVVND WEKVCD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0430.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866977.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD7KK970.0D7KK97_ARALL; Uncharacterized protein
STRINGBostr.15697s0430.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1