PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15697s0347.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92284.7 Da PI: 6.3678 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Bostr.15697s0347.1.p 20 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 78 5678*****************************************************97 PP | |||||||
2 | START | 171.1 | 7.4e-54 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v ++ v+e+l+d++ W ++++ +etl+vi +g Bostr.15697s0347.1.p 169 IAEETLAEFLCKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPI-KVAEILKDRPSWFRDCRCVETLNVIPTGng 256 7899******************************************************.8888888888******************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l +++ +a+++l++ Rdf+++Ry+ +l++g++v++++S+++ + p+ sss+vRa++l Sg+li+p+++g+s +++v+hvdl+ Bostr.15697s0347.1.p 257 GTIELVNTQIYAPTTLAAaRDFWTLRYSTSLEDGSYVVCERSLTPATGGPNgplSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLD 345 **************************************************99************************************* PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqce 205 ++++++lr+l++s+ + ++k++va+l++ ++ Bostr.15697s0347.1.p 346 VSSVPEVLRPLYESSKILAQKMTVAALRHVRQ 377 ***************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.451 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 19 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.82E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-19 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.21E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 25.143 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 3.03E-70 | 163 | 379 | No hit | No description |
SuperFamily | SSF55961 | 2.33E-34 | 168 | 380 | No hit | No description |
SMART | SM00234 | 5.2E-51 | 168 | 378 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-18 | 168 | 373 | IPR023393 | START-like domain |
Pfam | PF01852 | 3.8E-51 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 1.5E-49 | 693 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MMAHSMDDRD SPDKGFDSGK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILCNI 60 EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGFM 120 KHRIHTASGT TTDNSCESVV VSGQQRQQQN PRHQHPQLDA NNPANLLSIA EETLAEFLCK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGIAARACGL VSLEPIKVAE ILKDRPSWFR 240 DCRCVETLNV IPTGNGGTIE LVNTQIYAPT TLAAARDFWT LRYSTSLEDG SYVVCERSLT 300 PATGGPNGPL SSSFVRAKML SSGFLIRPCD GGGSIIHIVD HVDLDVSSVP EVLRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQYSG GRQPAVLRTF SQRLCRGFND AVNGFADDGW 420 SPMSSDGGED ITIMINSSSA KFAGSQYGSS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL 480 REHRAEWADY GVDAYSAASL RATPFAVPCV RTGGFPSNQV ILPLAQTLEH EEFLEVVRLG 540 GHAYSPEDMG LSRDVYLLQL CSGVDENEVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL 600 EQKMNPNDHQ SANRTRDLAS SLDGSTKTDS ETNSRLVLTI AFQFTFDNHS RDNVATMARQ 660 YVRNVVGSIQ RVALAITPRP GSMQLPTSPE ALTLVRWITR SYSIHTGADL FGSDSQSCGG 720 DALLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML DKTLDDSGRK 780 ALCSEFAKIM QQGYANLPAG ICVSSMGRPV SYEQATVWKV VDDNESNHCL AFILVNWSFV 840 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00170 | DAP | Transfer from AT1G30490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15697s0347.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ440967 | 0.0 | AJ440967.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (hb9 gene). | |||
GenBank | AK226570 | 0.0 | AK226570.1 Arabidopsis thaliana mRNA for HD-Zip protein, complete cds, clone: RAFL07-12-P11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460847.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-9 | ||||
Swissprot | O04292 | 0.0 | ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9 | ||||
TrEMBL | D7KFK4 | 0.0 | D7KFK4_ARALL; Uncharacterized protein | ||||
STRING | Bostr.15697s0347.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30490.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15697s0347.1.p |
Publications ? help Back to Top | |||
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