PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15697s0168.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35614.9 Da PI: 7.8712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.1 | 1.1e-33 | 77 | 218 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+P+d+e++ +L++kv+++k + + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ Bostr.15697s0168.1.p 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklihplI---DefipTLEGEnGICYTHPEKLP-GVRKDGQVRHFFHRPSKAYTTGTRKRRK 160 799***********9.89*****999966664332...133222443336**********.666777888******************7 PP NAM 78 tk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ + +W++tgk+++vls ++ + g kk+Lv+y gr++k+ekt+Wvmh+y+l Bostr.15697s0168.1.p 161 VStdeeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 218 33345444788************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-36 | 68 | 237 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.452 | 77 | 237 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 78 | 218 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSWSAGSDDN YDLNLERVSN IDHPSIQLKD QSQSCVTSGP DSKIIVESPV MITCPSCGHK 60 THHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLIHPLI DEFIPTLEGE 120 NGICYTHPEK LPGVRKDGQV RHFFHRPSKA YTTGTRKRRK VSTDEEGHET RWHKTGKTRP 180 VLSQSGEAGF KKILVLYTNY GRQKKPEKTN WVMHQYHLGN SEDEKDGEPV LSKIFYQTQP 240 RQCGNSTEPK PKNLVNLNRF SYENIQAGFG YEHGGKSEET SQVIRELVVR EGDGSCSFLS 300 FTCDASKGKE SLMKNQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15697s0168.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 0.0 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478220.1 | 0.0 | PREDICTED: NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 0.0 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | R0GQV5 | 0.0 | R0GQV5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.15697s0168.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 0.0 | NAC domain containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15697s0168.1.p |