PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0151.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 331aa    MW: 35991 Da    PI: 9.7369
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0151.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.53e-3847107262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Bostr.15697s0151.1.p  47 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRMK 107
                           67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.4E-3350105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90151105IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-2751105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFGNCDQKKK MPIISSPNTN LLASMQSKNM IVAPSHQQQQ QQQPQQPQPQ LKCPRCDSSN  60
TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRMKRPS TGTATTASTV  120
STTTSSSPNN PHQISHFSSM NHHPLFYGLS DHVNNLPMIP SRFSDSSKTS SSSGLESEFL  180
SSGFSSLSAL GLGLPHHMSH DHTINGSFIN NSTTNKPFLL SGLFGSSMSS SSSTILQHPH  240
KPINNGSDML GQSHLQTLAS LQDLHVGGNN EDMNKEGKLD QISGNINGFM SSTSSDPSNY  300
NSMWNNASVV NGAWLDPTNN NVGSSLTSLI *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0151.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992720.0AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-180PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-180dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-180dof zinc finger protein DOF1.4-like isoform X1
SwissprotQ9FZA41e-161DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-179A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-179A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBostr.15697s0151.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-139Dof family protein