PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15697s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 33501.4 Da PI: 6.7392 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Bostr.15697s0023.1.p 57 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAEEAACAYDCAARAMRG 106 59*******.**********73....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.918 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 57 | 114 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.79E-30 | 57 | 113 | No hit | No description |
Pfam | PF00847 | 9.4E-11 | 57 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-29 | 57 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-33 | 57 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEEAIMRLEG AEHREADNNS LKRKPSRPSS TAPSFPGGVA TSKAAAGTGA TGGSTIRYRG 60 VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPMPSL 120 DSYHHRIFSP PPMNMFLLQD VLNAHSLSPL NTFSYPPCNL SNVNDVVHES FTNVNDVSED 180 LSPKAKRSST IDNESLISIF EPEPAGSGLL QEVVQSFLPK PISQHASTFP KRNQHSVGVF 240 PTMPETGFQT DLGLPNVSVE GNGFGQVKYH GELGWADHES GFDSATMQYN GNVGMLHQYC 300 FHDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 47 | 113 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15697s0023.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000103 | 0.0 | AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence. | |||
GenBank | AY560889 | 0.0 | AY560889.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g24590) mRNA, complete cds. | |||
GenBank | BT026073 | 0.0 | BT026073.1 Arabidopsis thaliana At1g24590 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477991.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2 | ||||
Swissprot | Q9FYK5 | 0.0 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | R0GTR4 | 0.0 | R0GTR4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.15697s0023.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-158 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15697s0023.1.p |