PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15697s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 43644.7 Da PI: 8.9546 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Bostr.15697s0010.1.p 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 8.6e-05 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Bostr.15697s0010.1.p 141 WVCERCSKGYAVQSDYKAHLKTC 163 58*******************98 PP | |||||||
3 | zf-C2H2 | 11.2 | 0.0012 | 171 | 189 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Bostr.15697s0010.1.p 171 DCGRVFSRVESFIEHQDTC 189 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.92E-5 | 59 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.018 | 62 | 80 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 94 | 141 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MIDYEQNNNH RNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAVVVS LSPRTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV RKKVYVCPEP TCLHHDPCHA 120 LGDLVGIKKH FRRKHSVYKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE 180 SFIEHQDTCT IRDPPPTNHR PLQQHTAGTV APSRTTSTTS FGPLLHGLPL LRPPPPSYQH 240 LQALVYPFNA SSAPFESLEL QLSIGMARTS AQAKSTEKGE TSLTKERPNE EARKAMIMRQ 300 EAKRQIEMAE TDFEKAKRIR KEAKAELEKA QIVREEAIKR INATMMEITC HSCKNLFQLP 360 AMADESTSSL VMSYVSSATT EGECE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-17 | 139 | 189 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 4e-17 | 139 | 189 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15697s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493476 | 0.0 | AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305059.1 | 0.0 | protein indeterminate-domain 16 | ||||
Swissprot | Q9FRH4 | 0.0 | IDD16_ARATH; Protein indeterminate-domain 16 | ||||
TrEMBL | R0GPX0 | 0.0 | R0GPX0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.15697s0010.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25250.1 | 0.0 | indeterminate(ID)-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15697s0010.1.p |
Publications ? help Back to Top | |||
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