PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15654s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | E2F/DP | ||||||||
Protein Properties | Length: 396aa MW: 44452.8 Da PI: 5.5333 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.1 | 1.3e-27 | 152 | 217 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf+kl++++e+g+++ln +a+ L +v ++RRiYDi+NVLe+++liek+ kn+irwkg Bostr.15654s0048.1.p 152 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 217 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.9E-29 | 148 | 219 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-17 | 152 | 215 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.0E-34 | 152 | 217 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.6E-25 | 154 | 217 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.99E-40 | 228 | 335 | No hit | No description |
SuperFamily | SSF144074 | 5.75E-29 | 229 | 334 | No hit | No description |
Pfam | PF16421 | 4.4E-25 | 233 | 332 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRCSSLT PSSTNRPFSV PESLPNAQQS 60 PLIPSHWDDS YSQITQKVQK SRKNHRILLG SIANMSGESI DIAKVIVKQE SPQDCKRVYN 120 KSKVTKQSKA GKRMANGEAQ SGGLNATSNN CRYDSSLGLL TKKFVKLIQE AEDGTLDLNY 180 CADVLEVQKR RIYDITNVLE GIGLIEKTTK NHIRWKGADN LGQKDLGDQI ARLKSEVESM 240 QSEESRLDDL IRERQEALRS LEEDEFCRRY MFMTEEDITS LPRFQNQTLL AIKAPTASYI 300 EVPDPDEMMS FPQPHYRMVI RSRMGPIDVY LLSKYKGDSG ETSDKLGHES DQKAPSGVDT 360 PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-25 | 152 | 218 | 7 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00190 | DAP | Transfer from AT1G47870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15654s0048.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF242581 | 0.0 | AF242581.1 Arabidopsis thaliana E2F transcription factor-2 E2F2 mRNA, complete cds. | |||
GenBank | AJ417834 | 0.0 | AJ417834.1 Arabidopsis thaliana mRNA for transcription factor E2Fc (e2Fc gene). | |||
GenBank | AY045636 | 0.0 | AY045636.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds. | |||
GenBank | AY058231 | 0.0 | AY058231.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870512.1 | 0.0 | transcription factor E2FC isoform X1 | ||||
Swissprot | Q9FV70 | 0.0 | E2FC_ARATH; Transcription factor E2FC | ||||
TrEMBL | D7KBY0 | 0.0 | D7KBY0_ARALL; T2E6.2 | ||||
STRING | Bostr.15654s0048.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM808 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.1 | 0.0 | E2F/DP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15654s0048.1.p |
Publications ? help Back to Top | |||
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