PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1460s0153.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 346aa MW: 38433.5 Da PI: 5.8143 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.1e-06 | 14 | 56 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ + + +Ce ++ +lC++C H H++v Bostr.1460s0153.1.p 14 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrvasrHERV 56 57******99******************999556677778766 PP | |||||||
2 | zf-B_box | 32.4 | 1.9e-10 | 56 | 101 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ + C+ + lC C e+H+ H++vp+ Bostr.1460s0153.1.p 56 VRVCQSCESAPAAFLCKADAASLCTACDAEIHSAnplakrHQRVPI 101 689*****************************66899999**9997 PP | |||||||
3 | CCT | 69.3 | 1e-23 | 276 | 318 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+ Bostr.1460s0153.1.p 276 REARVMRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 318 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.665 | 11 | 58 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-8 | 11 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.54E-8 | 14 | 58 | No hit | No description |
PROSITE profile | PS50119 | 11.519 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.1E-8 | 56 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-8 | 57 | 101 | No hit | No description |
SMART | SM00336 | 9.0E-11 | 59 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-17 | 276 | 318 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.549 | 276 | 318 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRVA SRHERVRVCQ 60 SCESAPAAFL CKADAASLCT ACDAEIHSAN PLAKRHQRVP ILPLSANSCN SIETDADNDE 120 DDREVASWLL PNPGKNSGNH QNNGFLFGVE YLDLVDYNSS SMDNQFEDHQ YSQYQRSFGG 180 DGVVPLQVEE TTSHQQQSQH NFQLGINYGC SSGAHYNNSL KDLNYSASVS SMDISVVPES 240 TASDITVQHA RTTKETIDQL SGPPTQMVQQ LTPMEREARV MRYREKKKTR KFDKTIRYAS 300 RKAYAEIRPR IKGRFAKRIE TEAEAEEIFS TSLMSETGYG IVPSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1460s0153.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHCOL2A | 0.0 | L81120.1 Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds. | |||
GenBank | AY088779 | 0.0 | AY088779.1 Arabidopsis thaliana clone 949 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485482.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 0.0 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | I3RT18 | 0.0 | I3RT18_ARALL; Putative flowering-time constans protein | ||||
STRING | Bostr.1460s0153.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 0.0 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1460s0153.1.p |
Publications ? help Back to Top | |||
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