PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1460s0153.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CO-like
Protein Properties Length: 346aa    MW: 38433.5 Da    PI: 5.8143
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1460s0153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.1e-061456440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         r C+++ +   + +Ce ++ +lC++C    H        H++v
  Bostr.1460s0153.1.p 14 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrvasrHERV 56
                         57******99******************999556677778766 PP

2zf-B_box32.41.9e-1056101342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           r+C+ +e+ ++ + C+ +   lC  C  e+H+       H++vp+
  Bostr.1460s0153.1.p  56 VRVCQSCESAPAAFLCKADAASLCTACDAEIHSAnplakrHQRVPI 101
                          689*****************************66899999**9997 PP

3CCT69.31e-23276318143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+
  Bostr.1460s0153.1.p 276 REARVMRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 318
                          9****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6651158IPR000315B-box-type zinc finger
SMARTSM003362.2E-81158IPR000315B-box-type zinc finger
CDDcd000218.54E-81458No hitNo description
PROSITE profilePS5011911.51954101IPR000315B-box-type zinc finger
PfamPF006435.1E-856101IPR000315B-box-type zinc finger
CDDcd000211.26E-857101No hitNo description
SMARTSM003369.0E-1159101IPR000315B-box-type zinc finger
PfamPF062031.4E-17276318IPR010402CCT domain
PROSITE profilePS5101716.549276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRVA SRHERVRVCQ  60
SCESAPAAFL CKADAASLCT ACDAEIHSAN PLAKRHQRVP ILPLSANSCN SIETDADNDE  120
DDREVASWLL PNPGKNSGNH QNNGFLFGVE YLDLVDYNSS SMDNQFEDHQ YSQYQRSFGG  180
DGVVPLQVEE TTSHQQQSQH NFQLGINYGC SSGAHYNNSL KDLNYSASVS SMDISVVPES  240
TASDITVQHA RTTKETIDQL SGPPTQMVQQ LTPMEREARV MRYREKKKTR KFDKTIRYAS  300
RKAYAEIRPR IKGRFAKRIE TEAEAEEIFS TSLMSETGYG IVPSY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1460s0153.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHCOL2A0.0L81120.1 Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds.
GenBankAY0887790.0AY088779.1 Arabidopsis thaliana clone 949 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485482.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965020.0COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLI3RT180.0I3RT18_ARALL; Putative flowering-time constans protein
STRINGBostr.1460s0153.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.10.0CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]