PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1460s0094.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 33338 Da PI: 5.5481 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 90 | 142 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lg++ rq+ +WFqNrRa++k Bostr.1460s0094.1.p 90 KKRLQIEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 142 4457889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.6 | 9.4e-40 | 88 | 179 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L + +++L +e Bostr.1460s0094.1.p 88 EKKKRLQIEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAYNKKLLAE 177 69*************************************************************************************999 PP HD-ZIP_I/II 91 lk 92 ++ Bostr.1460s0094.1.p 178 VM 179 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.115 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-16 | 87 | 148 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-18 | 87 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.56E-15 | 89 | 145 | No hit | No description |
Pfam | PF00046 | 9.5E-15 | 90 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 92 | 152 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-5 | 115 | 124 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 124 | 140 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.1E-14 | 145 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MYVFDPTADA DAGLRLEMAF PQHGFMFQQL HEDNSQDQLP SCPPLLFNGG GNYMMNRSMS 60 LMNVQEDHNQ TLDEENLSDD GAHTMLGEKK KRLQIEQVKA LEKSFELGNK LEPERKIQLA 120 KALGMQPRQI AIWFQNRRAR WKTRQLERDY DSLKKQFESL KSDNDSLLAY NKKLLAEVMA 180 LKNKECNEAN IIKREAEASW SNNGSTENSS DINLEMPRET TTTHVNTIKD LFPSSIRSSA 240 HRGDDDHHQN HEMVQEESLC NMFNGIDETT SAGYWAWSDP NHNHHHQFN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00322 | DAP | Transfer from AT3G01220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1460s0094.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. | |||
GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. | |||
GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485524.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-20-like | ||||
Swissprot | Q8LAT0 | 0.0 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | D7LAH8 | 0.0 | D7LAH8_ARALL; ATHB20 | ||||
STRING | Bostr.1460s0094.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 0.0 | homeobox protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1460s0094.1.p |