PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1460s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 40300.5 Da PI: 5.173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.8 | 1.9e-31 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptde+++ e+L++k+ + + e v ++v+i++++P++Lp ++++ +++fF+k+ ++y tg+rk+r+ Bostr.1460s0050.1.p 55 LPKGVKFEPTDEDII-EFLEAKCGLGDsdphmlI---EefirpVTEDVGINYTHPQNLP-GANKDGVSVFFFHKTVQAYGTGQRKRRKit 139 799************.9*****987775666542...134454678899**********.445566799******************745 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+yk + +k+ek++Wv+h+y+l Bostr.1460s0050.1.p 140 ptlvnDEPVRWHKTGRTKPVML-NGVQRGCKKIMVLYKSarKGSKPEKSNWVLHQYHL 196 5555433788************.99************5433666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-36 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.499 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-13 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MARAWIVDGR GIATKVKNAS LSSALQIQDC GAHIKCPNCS YRIDNSNVLL PWPGLPKGVK 60 FEPTDEDIIE FLEAKCGLGD SDPHMLIEEF IRPVTEDVGI NYTHPQNLPG ANKDGVSVFF 120 FHKTVQAYGT GQRKRRKITP TLVNDEPVRW HKTGRTKPVM LNGVQRGCKK IMVLYKSARK 180 GSKPEKSNWV LHQYHLGTEG KEIGDYVVSK ITYQQQKLGE LPDEGESSGA RGGPRTPKTN 240 TPTPPRPVDG VAGDEEAFDD SKMFDPFIEG LDSIPEAALG KTWSKKARMD EDFVVNLSED 300 SLTCNESIEA SSIWENQVLP NPSLGTIGEF DGFSISDLEN ADLGTPPDFL TLASQESLLN 360 WIGWL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1460s0050.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 0.0 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297963.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 9e-73 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | R0G621 | 0.0 | R0G621_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.1460s0050.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1460s0050.1.p |