PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.14547s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 557aa    MW: 61052.1 Da    PI: 6.046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.14547s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.5e-1012015512374
                  GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                           +++L+++Ae+++s g++ laq +Larl+++ +sp g+p++R+a+yf+eAL++ l++          +++ ++++ + ++aa+k fse+s
  Bostr.14547s0023.1.p 201 TDQLVKAAEVIESgGETCLAQGILARLNQQlSSPVGKPLERAAFYFKEALNNLLHN---------VSQTLNPYSLIFKIAAYKSFSEIS 280
                           579*********966788**********998************************9.........55566667789************* PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           P+l+f+++t Nqa+le+++g +r+Hi+Dfdi++G+QW++L+q+L  R++ +p sl+iT+++sp+++++ el  t+++L++fA+e+++++
  Bostr.14547s0023.1.p 281 PVLQFANFTSNQALLESFHGFHRLHIVDFDIGYGGQWASLMQELVLRDNAAPlSLKITVFASPANHDQLELGFTQDNLKHFASEINISL 369
                           ************************************************99998************************************ PP

                  GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                           +++vl   +l+ l +++  + +++Ea+aVn++ + ++ l          + vL++vk+lsP+++v++++ +++++ +F ++++++l+ +
  Bostr.14547s0023.1.p 370 DIQVL---SLDLLgSISWPNASEKEAVAVNISAASFSYL----------PLVLRFVKHLSPTIIVCSDRGCERTDLPFPQQLAHSLHSH 445
                           ****9...555552333345677**********999998..........67************************************** PP

                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                           +al++sl+a   ++ ++++k+Er+l+++ei+++v+ + +     ++ +++W++++ ++GF+pv+ s+++++qa++l+++++++g++ve+
  Bostr.14547s0023.1.p 446 AALLESLDAV-NANLDAMQKIERFLIQPEIEKLVMDRSRP---IERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEK 530
                           *******887.56779********************9998...55677***************************************** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           +++sl+l+W++ +Lv vSaWr
  Bostr.14547s0023.1.p 531 KHNSLLLCWQRTELVGVSAWR 551
                           ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.055174531IPR005202Transcription factor GRAS
PfamPF035142.6E-98201551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLLPFEEFQG KGISFFSSFS SSFSEPPSPL LSHRKILGGE EVQVPTAEPN SVLDSLRSPT  60
SSSTVSSSHG GNSAVGGGGD ATTDEQCGHI GLGDWDQVPH DHEQSILRLI MGDSTDPSLE  120
LNSILQTSPT FHDTSPGFGV VDTGFGLDHH SVPPLEKPHV PGLLINQSQT HYTQNPAAIY  180
YGHQHTPPPA KRLNPGPMGI TDQLVKAAEV IESGGETCLA QGILARLNQQ LSSPVGKPLE  240
RAAFYFKEAL NNLLHNVSQT LNPYSLIFKI AAYKSFSEIS PVLQFANFTS NQALLESFHG  300
FHRLHIVDFD IGYGGQWASL MQELVLRDNA APLSLKITVF ASPANHDQLE LGFTQDNLKH  360
FASEINISLD IQVLSLDLLG SISWPNASEK EAVAVNISAA SFSYLPLVLR FVKHLSPTII  420
VCSDRGCERT DLPFPQQLAH SLHSHAALLE SLDAVNANLD AMQKIERFLI QPEIEKLVMD  480
RSRPIERPMM TWQAMFLQMG FSPVTHSNFT ESQAECLVQR TPVRGFHVEK KHNSLLLCWQ  540
RTELVGVSAW RCRSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3023255133375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.14547s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4628310.0AF462831.1 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds.
GenBankAK1172980.0AK117298.1 Arabidopsis thaliana mRNA, clone: RAFL16-86-D11.
GenBankAL1614710.0AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1.
GenBankAY1335370.0AY133537.1 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF6N150.0AF069299.1 Arabidopsis thaliana BAC F6N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287420.10.0scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLR0H9P40.0R0H9P4_9BRAS; Uncharacterized protein
STRINGBostr.14547s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]