PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.14419s0017.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 287aa    MW: 32220.1 Da    PI: 5.125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.14419s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19152202255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp ++g   r++lg+f+ta +Aa+a+++a+ +l+g
  Bostr.14419s0017.1.p 152 HYRGVRQRP-WGKFAAEIRDPHKRG--SRVWLGTFDTAIDAARAYDKAAFRLRG 202
                           8********.**********86665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-31151210No hitNo description
Gene3DG3DSA:3.30.730.107.5E-33151211IPR001471AP2/ERF domain
SMARTSM003801.4E-36152216IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22152212IPR016177DNA-binding domain
PROSITE profilePS5103224.144152210IPR001471AP2/ERF domain
PfamPF008475.8E-13152202IPR001471AP2/ERF domain
PRINTSPR003671.2E-13153164IPR001471AP2/ERF domain
PRINTSPR003671.2E-13192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATPNEVSAL WFIEKHLLDE ISPVAVATDR WMKQEPSASE SSSDSSFSSM IFGSSSSSAA  60
DFASFSKSEC KPEIIDLDTP RFISTPFEFD SQVSVSDFDF KPSDQNQFES ELQSQIRKPP  120
LNILLPAKPE WIQFAAENPK PEVTKPEEEN KHYRGVRQRP WGKFAAEIRD PHKRGSRVWL  180
GTFDTAIDAA RAYDKAAFRL RGSKAILNFP LEVGKWKPRA DEGDKKRKRD DDEDEKVTVV  240
QKQKVNGNGG ETFPLCDWDL TGFLNFPLLS PLSPHPSFGF SQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31151213163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-31149213266ATERF1
3gcc_A3e-31149213266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.14419s0017.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568679.11e-147ethylene responsive element binding factor 5
SwissprotO803411e-148EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A178UKK91e-146A0A178UKK9_ARATH; ERF5
STRINGBostr.14419s0017.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-103ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]