PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0471.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-X1
Protein Properties Length: 1144aa    MW: 125176 Da    PI: 8.1817
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.61.1e-07345363119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C+++CH GpC+pC+
  Bostr.13671s0471.1.p 345 CGRHQCERTCHVGPCDPCQ 363
                           ******************6 PP
2zf-NF-X116.51.9e-05409426118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C+ +CH+GpC+ C
  Bostr.13671s0471.1.p 409 CGNHFCSYICHPGPCGDC 426
                           ****************99 PP
3zf-NF-X125.82.2e-08468485118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C++ CH G+CppC
  Bostr.13671s0471.1.p 468 CGLHTCNEVCHAGDCPPC 485
                           ****************** PP
4zf-NF-X118.64.2e-06566584119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C++lCH G CppC 
  Bostr.13671s0471.1.p 566 CGQHSCESLCHSGHCPPCL 584
                           ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.24E-5166237No hitNo description
PROSITE profilePS500169.045175236IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590178233IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.598178234IPR001841Zinc finger, RING-type
CDDcd060082.15E-6267328No hitNo description
SMARTSM004380.023290308IPR000967Zinc finger, NF-X1-type
PfamPF014228.6292307IPR000967Zinc finger, NF-X1-type
CDDcd060086.02E-13335383No hitNo description
SMARTSM004385.3E-5345364IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-6345362IPR000967Zinc finger, NF-X1-type
CDDcd060089.21E-8403444No hitNo description
SMARTSM004381.9E-5409428IPR000967Zinc finger, NF-X1-type
PfamPF014223.6E-4409426IPR000967Zinc finger, NF-X1-type
CDDcd060081.00E-13458505No hitNo description
SMARTSM004383.8E-6468487IPR000967Zinc finger, NF-X1-type
PfamPF014227.8E-7468485IPR000967Zinc finger, NF-X1-type
SMARTSM00438190527558IPR000967Zinc finger, NF-X1-type
PfamPF0142219527538IPR000967Zinc finger, NF-X1-type
CDDcd060082.39E-10556608No hitNo description
SMARTSM004382.0E-4566585IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4566583IPR000967Zinc finger, NF-X1-type
CDDcd060081.20E-6613660No hitNo description
SMARTSM004380.079623641IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012676706IPR000967Zinc finger, NF-X1-type
PfamPF014220.065676691IPR000967Zinc finger, NF-X1-type
CDDcd060088.83E-5704753No hitNo description
PfamPF014226708734IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019715736IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MSFQVRRDRN DDRSRFNPQQ TWIPRNTSTS VVVVNEPSLP PNTDRNSESL DAGAASRPAY  60
LQRQLNGFGP PLYNHQQRSN NIAPPPPNRQ RRNNAAGTLP DNQHQRSNIV GPPPPNRQRR  120
NNASGTLPDN RQRVSSRTRP VNQGKRVAKE ENIVLTDPNL PQLVQEIQEK LVKSSIECMI  180
CYEKVGRSAN IWSCSSCYSI FHMNCIKRWA RAPTSIDLLA EKDQGDNWRC PGCQSVQLTS  240
SKEICYRCFC GKRKDPPSDP YLTPHSCGEP CGKPLEKEFV AAEITKEDLC PHVCVLQCHP  300
GPCPPCKAFA PPRSCPCGKK MVTTRCSERR SVLVCGQRCD KLLNCGRHQC ERTCHVGPCD  360
PCQVLVNATC FCKKKVETVI CGDMNVKGEL KAEDGVYSCS FNCGKLLGCG NHFCSYICHP  420
GPCGDCDLLP SRVKTCYCGK TRLEEQIRQN CLDPIPSCSN VCRKLLPCGL HTCNEVCHAG  480
DCPPCLVQVN QKCRCGSKSR AVECYITTSS ETEKFVCDKP CGRKKNCGRH RCSERCCPLL  540
NGKKNDISGH WDPHACQLPC GKKLRCGQHS CESLCHSGHC PPCLEMIFTD LTCACGRTSI  600
PPPLPCGTPV PSCQHPCSIP QPCGHSATHG CHFGDCPPCS APVEKKCVGG HVVLRNIPCG  660
LKDIRCNKIC GKTRRCGMHA CARNCHPEPC DSYNDSIAGM RVTCGQKCGA PRRDCRHTCA  720
ALCHLSAPCP DLRCEFPVTI TCSCGRITAT VPCDAGGRSA NGSNVDSAVY DEASVLRKLP  780
APLQPVESNG NRIPLGQRKL SCDDECAKLE RKRVLQDAFD ITPPNLEALH FSENSAMTEI  840
ISDLYRRDPK WVLAVEERCK FLVLGKARGS TSALKVHVFC PMQKDKRETV RLIAERWKLG  900
ISNAGWEPKR FTVVHVTPKS KPPTRIIGAR GGAMSIGGPH PPSFDPLVDM DPGLVVSLLD  960
LPREANISAL VLRFGGECEL VWLNDKNALA VFHDHARAAT AMRRLEHGSV YHGAVVVQNG  1020
GQSPSLSNAW GKLPGVSAWD VHKGNPWKKA VIQESDDSWG AEDSPIGGSS TDIQASAWRS  1080
AKSSTQIATS VNHWSVLEPE KASASPLEPI AQAEESSSSR ATGKQPVEGA GEEVVDDWEK  1140
VCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0471.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458351.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_019091551.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A178WL380.0A0A178WL38_ARATH; NFXL1
STRINGBostr.13671s0471.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1