PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13208s0028.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CO-like
Protein Properties Length: 329aa    MW: 37224.7 Da    PI: 5.9766
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13208s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.1e-051041334
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                           r C+ +++  +  +C+ ++  lC  C  + H
  Bostr.13208s0028.1.p 10 HRLCDYCDSSVALVYCKADSAKLCLACDKQVH 41
                          578*************************9999 PP

2zf-B_box21.45.3e-075596541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                           C+ +++ + +lfCe+ ++ lC++C  ++H       H+++p
  Bostr.13208s0028.1.p 55 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAsssslHSRRP 96
                          7**************************977447777777665 PP

3CCT60.36.4e-21283326144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Bostr.13208s0028.1.p 283 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 326
                           899***************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.381855IPR000315B-box-type zinc finger
SMARTSM003369.0E-13855IPR000315B-box-type zinc finger
CDDcd000215.55E-61155No hitNo description
PROSITE profilePS501199.9975197IPR000315B-box-type zinc finger
CDDcd000211.96E-85596No hitNo description
SMARTSM003360.285697IPR000315B-box-type zinc finger
PfamPF062038.0E-15283325IPR010402CCT domain
PROSITE profilePS5101714.743283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEEEEGHQRH RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVTNQLFAKH FRSLLCDSCH  60
DSPSSLFCET ERSVLCQNCD WQHHTASSSS LHSRRPFEGF TGSPSVPELL AIVGLDDLTP  120
DSGLLWETPE IVSLNDLIVS GGSSTHNFRA TDVPPLPKNR HATCGTYKDE MIRQLRGLAR  180
SEPSCMKFEA TDAEIDAGFQ FLEPDLFPSS ELESGLKWFD QQDEDLPYCS LLRNLSKSDE  240
KPENVDRESS VMVPVSDSFK RCEEDTVMVP VCTTTREINS LERNSALSRY KEKKKSRRYE  300
KHIRYESRKV RAESRTRIRG RFAKAADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13208s0028.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507837.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A384L5Q30.0A0A384L5Q3_ARATH; Uncharacterized protein
TrEMBLC0SV950.0C0SV95_ARATH; Uncharacterized protein At2g47890 (Fragment)
STRINGBostr.13208s0028.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]