PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13208s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 329aa MW: 37224.7 Da PI: 5.9766 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.2 | 2.1e-05 | 10 | 41 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 r C+ +++ + +C+ ++ lC C + H Bostr.13208s0028.1.p 10 HRLCDYCDSSVALVYCKADSAKLCLACDKQVH 41 578*************************9999 PP | |||||||
2 | zf-B_box | 21.4 | 5.3e-07 | 55 | 96 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41 C+ +++ + +lfCe+ ++ lC++C ++H H+++p Bostr.13208s0028.1.p 55 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAsssslHSRRP 96 7**************************977447777777665 PP | |||||||
3 | CCT | 60.3 | 6.4e-21 | 283 | 326 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a Bostr.13208s0028.1.p 283 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 326 899***************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.381 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.0E-13 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.55E-6 | 11 | 55 | No hit | No description |
PROSITE profile | PS50119 | 9.997 | 51 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.96E-8 | 55 | 96 | No hit | No description |
SMART | SM00336 | 0.28 | 56 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 8.0E-15 | 283 | 325 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.743 | 283 | 325 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEEEEGHQRH RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVTNQLFAKH FRSLLCDSCH 60 DSPSSLFCET ERSVLCQNCD WQHHTASSSS LHSRRPFEGF TGSPSVPELL AIVGLDDLTP 120 DSGLLWETPE IVSLNDLIVS GGSSTHNFRA TDVPPLPKNR HATCGTYKDE MIRQLRGLAR 180 SEPSCMKFEA TDAEIDAGFQ FLEPDLFPSS ELESGLKWFD QQDEDLPYCS LLRNLSKSDE 240 KPENVDRESS VMVPVSDSFK RCEEDTVMVP VCTTTREINS LERNSALSRY KEKKKSRRYE 300 KHIRYESRKV RAESRTRIRG RFAKAADP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13208s0028.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT023413 | 0.0 | BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507837.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 0.0 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A384L5Q3 | 0.0 | A0A384L5Q3_ARATH; Uncharacterized protein | ||||
TrEMBL | C0SV95 | 0.0 | C0SV95_ARATH; Uncharacterized protein At2g47890 (Fragment) | ||||
STRING | Bostr.13208s0028.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13208s0028.1.p |
Publications ? help Back to Top | |||
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