PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13175s0089.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family EIL
Protein Properties Length: 369aa    MW: 42216.6 Da    PI: 6.5198
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13175s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33321.4e-101242591255
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           ++lk+rmwkd++l+++lk++k++    ++                  km+r+QD++LkY +k+mevc+a+GfvYgi+pekgkp +g+sd
  Bostr.13175s0089.1.p  24 DDLKRRMWKDRNLMEKLKQQKRHH---ND-----------------VKMARSQDSVLKYKMKIMEVCKAKGFVYGIVPEKGKPITGSSD 92 
                           69*************999999983...23.................48***************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH--- CS
                  EIN3  90 sLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPt 175
                           sLr+WWke v+fd+n+p  i++y   +   +++++  ++++++ss  h l+e qDTtlgSLLsalmqhc+ppqrrfplekg++pPWWPt
  Bostr.13175s0089.1.p  93 SLRGWWKESVQFDQNAPDTITEYltlA--AAAAAELIDKSSSSSSLLHLLQEPQDTTLGSLLSALMQHCMPPQRRFPLEKGIAPPWWPT 179
                           ***********************9651..44444444444457999******************************************* PP

                           S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT CS
                  EIN3 176 GkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeek 255
                           G+e wwg++g+++++g ppy++phdl+k wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake+++++++++ +e+
  Bostr.13175s0089.1.p 180 GTEIWWGKQGAAHEHGVPPYRNPHDLRKSWKVSVLAAVIKHMSPNLGRVRRLARQSKSLQDKMMAKETDTWSRIIKDQEA 259
                           ****************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.6E-10247257No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-63131262IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-55137259IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVEVEELEAL SPIEDEEEEE ISYDDLKRRM WKDRNLMEKL KQQKRHHNDV KMARSQDSVL  60
KYKMKIMEVC KAKGFVYGIV PEKGKPITGS SDSLRGWWKE SVQFDQNAPD TITEYLTLAA  120
AAAAELIDKS SSSSSLLHLL QEPQDTTLGS LLSALMQHCM PPQRRFPLEK GIAPPWWPTG  180
TEIWWGKQGA AHEHGVPPYR NPHDLRKSWK VSVLAAVIKH MSPNLGRVRR LARQSKSLQD  240
KMMAKETDTW SRIIKDQEAS GSKRQGEFLE ASKSVYTCQN STCPKSDVSF GFGDKNSRNV  300
KMIYYGVSSS AMDKRDDDDH SINGNWMDYF WLEKMLNELH CSRRFEDDDN DGTETDLNQF  360
TESVNRTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-531382594125Protein ETHYLENE INSENSITIVE 3
4zds_B2e-531382594125Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13175s0089.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3563320.0AL356332.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878013.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X2
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLB7U9T00.0B7U9T0_ARAAE; AT5G10120-like protein
STRINGBostr.13175s0089.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]