PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13175s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38229.8 Da PI: 5.8573 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+lv++v+++G +W++ ++ g++R++k+c++rw +yl Bostr.13175s0070.1.p 14 KGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++++E++ +++++ lG++ W+tIa+ ++ gRt++++k++w+++l Bostr.13175s0070.1.p 67 RGRFSPDEEQTILNLHSVLGNK-WSTIANQLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.363 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.031 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRSPISDDS GLKKGPWTPD EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPITHRPRT DIFAGLSQLM SLSSNLRGFV DLQQQFPIDQ EHTILKLQTE LAKLQLFQYL 180 LQPSSINSIN PNDFDTISLL NSIASFKETT TTTSNNLDLG CLGSYLQDFN SLPSLKTLNS 240 NMEPSSVLPQ NPDDNHFKFF TQRENLPVSP IWLSDPSSST QSLLPSLDPS SVVTDDLIRN 300 QYGIEDVNSN ITSSSCQESA ASASAAWPDH LLDDSIFSDI S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00503 | DAP | Transfer from AT5G10280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13175s0070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519619 | 0.0 | AY519619.1 Arabidopsis thaliana MYB transcription factor (At5g10280) mRNA, complete cds. | |||
GenBank | BT002877 | 0.0 | BT002877.1 Arabidopsis thaliana clone RAFL14-88-D17 (R20400) putative myb family transcription factor (At5g10280) mRNA, complete cds. | |||
GenBank | BT004402 | 0.0 | BT004402.1 Arabidopsis thaliana clone U20400 putative myb family transcription factor (At5g10280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196590.1 | 0.0 | myb domain protein 92 | ||||
Swissprot | Q9SBF3 | 0.0 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A178UPI6 | 0.0 | A0A178UPI6_ARATH; MYB92 | ||||
STRING | Bostr.13175s0070.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 0.0 | myb domain protein 92 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13175s0070.1.p |
Publications ? help Back to Top | |||
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