PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13175s0048.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | AP2 | ||||||||
Protein Properties | Length: 581aa MW: 64808.9 Da PI: 6.7321 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.9e-14 | 269 | 328 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k+++ Bostr.13175s0048.2.p 269 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 328 57*******************666664478446**********99*************97 PP | |||||||
2 | AP2 | 49.6 | 9.6e-16 | 371 | 422 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Bostr.13175s0048.2.p 371 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 422 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-11 | 269 | 328 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-16 | 269 | 337 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.60E-20 | 269 | 338 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-14 | 270 | 336 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.545 | 270 | 336 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-25 | 270 | 342 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 271 | 282 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-10 | 371 | 422 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 371 | 431 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.03E-11 | 371 | 430 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 372 | 430 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-31 | 372 | 436 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 372 | 430 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 412 | 432 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFGSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE 60 AQLAAASMAD STILTTFVDP QSHSQNHIPK LEDFLGDSSS IVRYSDNSQT ETQDSSLTQI 120 YDPRHHHQNH NQTGFYSDHH DFKTMAGFQT AFSTNSGSEV DDSASIGRTH LAGEYLGHVV 180 ESSGPELGFH GGSHTTGGAL SLGVNVTSTN HLNDNDTNHH YRGINNGERN NNNNENEKTD 240 SEKEKSIVAV ETSDCSNKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK 300 GRQVYLGGYD KEDKAARAYD LAALKYWNAT ATTNFPITNY SKELEEMKHM TKQEFIASLR 360 RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF 420 RGINAVTNFE MNRYDVEAIM KSALPIGGAA KRLKLSLEAA SSEQKPILGH QLHHFQQQQQ 480 QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHQQQQQ QQQQQNFFQH 540 FPANAASDST GSNNNSNVQG SMGLMAPNPA EFFLWPNQSY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13175s0048.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020876725.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Refseq | XP_020876726.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | D7M2X9 | 0.0 | D7M2X9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.13175s0048.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13175s0048.2.p |
Publications ? help Back to Top | |||
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