PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13158s0214.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 42396.9 Da PI: 4.8914 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 3.9e-08 | 197 | 241 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n Er+ R++iN+++ +L++llP+ K + ++L +A++Y+ +Lq Bostr.13158s0214.1.p 197 NSPERKQRNDINKKMRTLQDLLPNY-----HKDDNESMLDEAINYMTNLQ 241 778*********************7.....599**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.52E-8 | 187 | 245 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 188 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-13 | 190 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.951 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-6 | 197 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-5 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMMFLPSDYC CRLNDQQYME LVFENGQILA KGQRSNVSLQ NQRTISIMDL YEAEYNEDFM 60 KSIIHGGGGA INNLGDTQVV PQNHVVAPET NMLESNKHVD DSTLIETLKA SSSKRMMVDY 120 DNRMKIEFLP PDEQSVVAER TVESGFDTSS AGFTEDSEES TYLCSILDDQ SDDARPRVPA 180 RTRKALVKRK RNAEAYNSPE RKQRNDINKK MRTLQDLLPN YHKDDNESML DEAINYMTNL 240 QLQVQMMTMG NRFVTPSMML PLGPHYSQMG VAMGMGMQMG TPQFLPAPVL GAGLPGINNS 300 ANMLRFLNHP DPGLMPTQNS APFTPTEKCS PQSVPPSCAT FPNQIPNPTF LSNLDGATPY 360 TRNQGTLTDG GILSDKKSGN P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13158s0214.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493661 | 0.0 | AB493661.1 Arabidopsis thaliana At3g62090 mRNA for hypothetical protein, partial cds, clone: RAAt3g62090. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093081.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like | ||||
Swissprot | Q8L5W7 | 0.0 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A178VFI3 | 0.0 | A0A178VFI3_ARATH; PIL2 | ||||
STRING | Bostr.13158s0214.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13423 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 0.0 | phytochrome interacting factor 3-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13158s0214.1.p |