PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.13158s0194.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 27585.7 Da PI: 4.9152 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.4e-17 | 32 | 83 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f+++q++ Le Fe++ + +++ + A++lgL+ rqV +WFqN+Ra++k Bostr.13158s0194.1.p 32 KRFSEDQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.8 | 6.1e-38 | 30 | 121 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +++r+s++q+k+LE Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y++l+++ e ++ke+++L +e Bostr.13158s0194.1.p 30 NQKRFSEDQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNNLASQFEIMKKEKQALVSE 118 589*************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ Bostr.13158s0194.1.p 119 LQR 121 986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-17 | 9 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.4E-13 | 22 | 89 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.358 | 25 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-12 | 31 | 86 | No hit | No description |
Pfam | PF00046 | 1.2E-14 | 32 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-17 | 32 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.7E-5 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.7E-5 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.2E-16 | 85 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MEEGDFFDCC FSEINSGMTM NKKKMKKSYN QKRFSEDQIK SLELIFESET RLEPRKKVQV 60 ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNILRANYNN LASQFEIMKK EKQALVSELQ 120 RLKEEMHKPE EERHHERCGE QGMALSSSTE SHNGKCEPEV RLNQGIVLCN DGDNNNIKTE 180 YFGFEEETDH ELMNIVEQPD DSCLTSSDNW GGFNSDSLLD QSSSNYPNWW EFWS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00013 | PBM | Transfer from AT3G61890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.13158s0194.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY059828 | 0.0 | AY059828.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (F21F14.6) mRNA, complete cds. | |||
GenBank | AY087187 | 0.0 | AY087187.1 Arabidopsis thaliana clone 32615 mRNA, complete sequence. | |||
GenBank | BT002206 | 0.0 | BT002206.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (At3g61890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413333.1 | 1e-140 | PREDICTED: homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | Q9M276 | 1e-136 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A1J3CI41 | 1e-135 | A0A1J3CI41_NOCCA; Homeobox-leucine zipper protein ATHB-12 (Fragment) | ||||
STRING | Bostr.13158s0194.1.p | 1e-174 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-135 | homeobox 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.13158s0194.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|