PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0188.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 296aa    MW: 32905.3 Da    PI: 9.7067
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0188.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.3e-3968128262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  Bostr.13158s0188.1.p  68 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 128
                           6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3067126IPR003851Zinc finger, Dof-type
PfamPF027016.5E-3370126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70572126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDATKWTQGF QEMINVKPME QMISNTNNNT SQQQPTFIAT NTRPNATASN GGSGGNNNNT  60
AETRKARPQE KVNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS  120
SRKNKRSSTS LASPSNPKLP DLNPPILFSS QIPNKSKDFN LLSFPVMQDH HHHHHALELL  180
RSNGVSSRGM NTFLPGQMMD SNSVLYSSLG FPTMPDYKQS NNNLSFSIDH HQGIGHNTIN  240
SNQRAQDNND DMNGASRVLF PFSDMKELAS TTQEKSHGNN TYWSGMFSNT GGSSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0188.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331270.0BT033127.1 Arabidopsis thaliana unknown protein (At3g61850) mRNA, complete cds.
GenBankX979410.0X97941.2 A.thaliana mRNA for zinc finger protein DAG1 (BBFa).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876642.10.0dof zinc finger protein DOF3.7 isoform X3
SwissprotQ433850.0DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLD7LSQ00.0D7LSQ0_ARALL; Uncharacterized protein
STRINGBostr.13158s0188.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.10.0Dof family protein