PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0062.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 628aa    MW: 68509.5 Da    PI: 4.6894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.23.8e-10127562615374
                  GRAS  15 gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                           ++  laq +Larl+++ +++ + p++R+a+y+teAL++ l++     +++ +p + s++n + ++aa+++fse+sP+l+f ++taNq+I
  Bostr.13158s0062.1.p 275 NNPILAQGILARLNHNlNNNPKPPFHRAASYITEALHSLLQD-----SSSPSPPSLSPQNLIFRIAAYRAFSETSPFLQFVNFTANQTI 358
                           55569***********55555689******************.....6666777777899***************************** PP

                  GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                           le++eg +r+Hi+Dfdi++G+QW++L+q+La +R+  ++ppsl+iT+++sp+++ ++ el+ t+e+L++fA e+gv+fe+++l  + l 
  Bostr.13158s0062.1.p 359 LESLEGFDRIHIVDFDIGYGGQWASLIQELAgKRNrsSSPPSLKITAFASPSTVtDEFELRFTEENLRNFAGETGVTFEIELLNLEILL 447
                           *******************************85556699*************999****************************888888 PP

                  GRAS 188 dleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                           + +++ L++ +   +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+
  Bostr.13158s0062.1.p 448 NPTYWPLSIFRsseKEAIAVNLPISSIVSG--------YLPLILRFLKQISPNVVVCSDRSCDRnNDAPFPNGVINALQYYTTLLESLD 528
                           8899**98888788*********9655544........5677**********************99**********************9 PP

                  GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgsl 358
                           ++   ++e+++++Er++++++i+++++++ ++    +e+   Wr  ++++GF+pv+ls++a++qa++ll++ + +g+++e++   s sl
  Bostr.13158s0062.1.p 529 SN---NAEAATSIERFCVQPSIQKLLTNRYRW----MERSPPWRGLFGQCGFSPVTLSQTAETQAEYLLQRNPLRGFHLEKRqssSSSL 610
                           99...79*************************....9*******************************************66555889* PP

                  GRAS 359 vlgWkdrpLvsvSaWr 374
                           vl+W++++Lv+vSaW+
  Bostr.13158s0062.1.p 611 VLCWQRKELVAVSAWK 626
                           ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.368235603IPR005202Transcription factor GRAS
PfamPF035141.3E-98275626IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVVV EEDLCFVVNN GGFSEPTSVL  60
DSVRSPSPFV SSSTTTLSSS HGGPSGGGGG GAAAAFSGAD GKCDQMGFED LDGVLSGGSP  120
RQEQSILRLI MAGDVVDPGS EFVGFDTGFG SDPVIDNPNP LFGYGFPFHD APEEEKFQIS  180
TNPEILINSN RGFFSDPPSS PPAKRLNSGQ PGSQHHQQWV FPFSDPGHES HDTFLTPPKI  240
AGEDDNDQDQ STLIIDQLFS AAAELIGTTT KGGDNNPILA QGILARLNHN LNNNPKPPFH  300
RAASYITEAL HSLLQDSSSP SPPSLSPQNL IFRIAAYRAF SETSPFLQFV NFTANQTILE  360
SLEGFDRIHI VDFDIGYGGQ WASLIQELAG KRNRSSSPPS LKITAFASPS TVTDEFELRF  420
TEENLRNFAG ETGVTFEIEL LNLEILLNPT YWPLSIFRSS EKEAIAVNLP ISSIVSGYLP  480
LILRFLKQIS PNVVVCSDRS CDRNNDAPFP NGVINALQYY TTLLESLDSN NAEAATSIER  540
FCVQPSIQKL LTNRYRWMER SPPWRGLFGQ CGFSPVTLSQ TAETQAEYLL QRNPLRGFHL  600
EKRQSSSSSL VLCWQRKELV AVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3226862610375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290271.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLR0H1P50.0R0H1P5_9BRAS; Uncharacterized protein
STRINGBostr.13158s0062.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]