PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0486.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 215aa    MW: 24344 Da    PI: 6.7311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0486.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07547344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           WT  Ed+ + +a  +++ g   +W++Ia  ++  +++ ++++++
  Bostr.13129s0486.1.p  5 QWTRSEDKMFEQALVLFPEGslnRWERIADQLQ--KSAGEVREHY 47
                          7*******************************9..8********9 PP
2Myb_DNA-binding431.1e-1399143347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Bostr.13129s0486.1.p  99 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 143
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.622155IPR017930Myb domain
SMARTSM007174.5E-7253IPR001005SANT/Myb domain
SuperFamilySSF466892.79E-11459IPR009057Homeodomain-like
PfamPF002495.6E-6548IPR001005SANT/Myb domain
CDDcd001674.13E-6651No hitNo description
PROSITE profilePS5129418.26192148IPR017930Myb domain
SuperFamilySSF466892.44E-1694149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1695147IPR006447Myb domain, plants
SMARTSM007177.0E-996146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1098142IPR009057Homeodomain-like
CDDcd001673.70E-899144No hitNo description
PfamPF002491.7E-1199143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSLNRWE RIADQLQKSA GEVREHYEAL VHDVFEIDSG  60
RVDVPDYMDD SGAAAGWDSA GQISFGSKHG ESERKRGTPW TENEHKLFLI GLKRYGKGDW  120
RSISRNVVVT RTPTQVASHA QKYFLRQNSV KKERKRSSIH DITTVDTNLA MPGSNMDWTG  180
QHGSPVQAPQ QQQIMSEFGQ QLNPGHFEDF GFRM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0486.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0883620.0AY088362.1 Arabidopsis thaliana clone 6170 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423540.11e-151PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1J3JWM91e-147A0A1J3JWM9_NOCCA; Transcription factor DIVARICATA
TrEMBLR0FLN31e-147R0FLN3_9BRAS; Uncharacterized protein
STRINGBostr.13129s0486.1.p1e-160(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-145MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]