PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0394.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 273aa    MW: 30961.8 Da    PI: 8.7233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0394.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-13132176347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Bostr.13129s0394.1.p 132 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 176
                           8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.2192679IPR017884SANT domain
SMARTSM007171.1E-52779IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-102983IPR009057Homeodomain-like
PfamPF002491.6E-53075IPR001005SANT/Myb domain
CDDcd001676.15E-63076No hitNo description
PROSITE profilePS5129418.108125181IPR017930Myb domain
SuperFamilySSF466891.08E-15127180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16129180IPR006447Myb domain, plants
SMARTSM007179.9E-11129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-11129181IPR009057Homeodomain-like
PfamPF002493.9E-10132176IPR001005SANT/Myb domain
CDDcd001676.92E-10132176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
METLHPLLSH VPTSDYRFVV QEMMCLQSSS WTKEENKKFE GALAVYADDT PDRWFKVAAM  60
IPGKTISDVM RQYSKLEEDL FDIEAGLVPI PGYRSTPCGF DDQLVSQRDF DAYRKLPNGA  120
RGFDQDRRKG VPWTEEEHRR FLLGLLKYGK GDWRNISRNF VGSKTPTQVA SHAQKYYQRQ  180
LSGAKDKRRP SIHDITTVNL LNANLSRPSS DQGCFVSQQA KPKQGFTHRD NAEERVMFLG  240
QNLSSVLSPY DPTVKFAGAD VYSDGGYTIT RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1631961176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0394.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195310.0AY519531.1 Arabidopsis thaliana MYB transcription factor (At5g05790) mRNA, complete cds.
GenBankBT0260540.0BT026054.1 Arabidopsis thaliana At5g05790 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491116.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0H8S80.0R0H8S8_9BRAS; Uncharacterized protein
STRINGBostr.13129s0394.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]