PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0349.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 282aa    MW: 31364.3 Da    PI: 7.0091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3109.51.5e-3443154199
                           EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                           f+k ltpsdv+k++rlv+pk++ae++              +++e+++ l++ed sg+sW+++++y+++s++yvltkGW++Fvk+++L+ 
  Bostr.13129s0349.1.p  43 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgadTSPSEKGMLLSFEDDSGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDP 131
                           99**********************************999778889******************************************** PP

                           T-EEEEEE-SSSEE..EEEEE-S CS
                    B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                           gD+v F+++++++++l+++++r+
  Bostr.13129s0349.1.p 132 GDVVFFQRHRSDSRRLFIGWRRR 154
                           *******98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4039164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-3041154IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-2842145No hitNo description
SMARTSM010194.2E-2743155IPR003340B3 DNA binding domain
PROSITE profilePS5086314.39543155IPR003340B3 DNA binding domain
PfamPF023628.8E-3243154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSVNHYSTDH HTLLWQQHRH TTDTSETTTT ATWLHDDLKE SLFEKSLTPS DVGKLNRLVI  60
PKQHAEKYFP LNAVVVSSGA DTSPSEKGML LSFEDDSGKS WRFRYSYWNS SQSYVLTKGW  120
SRFVKDKQLD PGDVVFFQRH RSDSRRLFIG WRRRGQCSSS AAATNSAVNT SSMAAPYRQI  180
PASNSYSNPP FHSEYSHYGA AVATAAETHS TPSSSVGGSS RTVRLFGVNL ECQTDENDGD  240
DSVAVAAAAA VVESPDGYYG QNMYYYYSHP HNMNIAFTGE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-51391544113B3 domain-containing transcription factor NGA1
5os9_B5e-51391544113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0349.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001331852.11e-157AP2/B3-like transcriptional factor family protein
SwissprotQ9FNI31e-152Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A178UF661e-156A0A178UF66_ARATH; AP2/B3-like transcriptional factor family protein
TrEMBLA0A384L0Y11e-156A0A384L0Y1_ARATH; DPA4
STRINGBostr.13129s0349.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-125B3 family protein