PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0321.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 259aa    MW: 28898.5 Da    PI: 4.4812
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0321.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.4e-131050242
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          ri  ++ r+ ++ kR+ng++KK +ELS+LCd++  +i f  
  Bostr.13129s0321.1.p 10 RIGGQRSRKASLKKRLNGLIKKTNELSILCDVQSFLIFFDR 50
                          6778899*****************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.694148IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-12160IPR002100Transcription factor, MADS-box
CDDcd002665.08E-20285No hitNo description
PRINTSPR004042.1E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-19394IPR002100Transcription factor, MADS-box
PfamPF003197.0E-121153IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARRKLQLAR IGGQRSRKAS LKKRLNGLIK KTNELSILCD VQSFLIFFDR EEDQLVVWPS  60
PEAAKSLIDN FYSLTDHERN KKAVDQESFI QTNIQKIEKK LADSRKVMTE FEMEHLMFEL  120
QLGRELADLS PTEVDKLISY SGKKIMSFSK EMGPTEQLDT TVDEASLGDE TLRASNVPSA  180
GCGGNGFNVM ETGSIYYIDK WVFVDPEVQK PCDETTHLPT TVNVLDLNME PSDVDEDLGG  240
TYKGESSKAA GGDEDDAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0321.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423334.11e-125PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLQ9FG201e-113Q9FG20_ARATH; AGAMOUS-like 96
STRINGBostr.13129s0321.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-117AGAMOUS-like 96