PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0320.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YA | ||||||||
Protein Properties | Length: 270aa MW: 29794.5 Da PI: 9.4908 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 88.8 | 7.4e-28 | 134 | 186 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN KQy++I++RRq+Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF Bostr.13129s0320.2.p 134 GTIYVNEKQYHGIIRRRQSRAKAEK---L-SRCRKPYMHHSRHLHAMRRPRGSGGRF 186 689*********************9...6.888***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.1E-30 | 131 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.713 | 132 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.7E-24 | 135 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MQNEELLSAP QTPWWNAFGS QPLITESLSG DASDSFPGVK AVIPETEQGV VDKQSSTTLF 60 TFSPGGGKSS KDVPKPHVAF AMQSACFDFG FARPMIYTKH PHVEQYYGVL SAYGSQRSSG 120 RVMLPLKMET EEDGTIYVNE KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR 180 GSGGRFLNTK KVDAATQSKP SNSQSSEVFH PENGTMNSSR EANRPNLSGS EVTSMDYFLS 240 SSVYSPGGMV MPIKWNAATM DIGCCNLNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-14 | 136 | 200 | 5 | 72 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0320.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084643 | 0.0 | AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288452.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_023637202.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q8LFU0 | 0.0 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | R0H8U3 | 0.0 | R0H8U3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.13129s0320.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 0.0 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0320.2.p |
Publications ? help Back to Top | |||
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