PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0320.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YA
Protein Properties Length: 270aa    MW: 29794.5 Da    PI: 9.4908
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.87.4e-28134186258
             CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            ++YVN KQy++I++RRq+Rak+e+   l +++rkpy+h+SRh hA+rRpRgsgGrF
  Bostr.13129s0320.1.p 134 GTIYVNEKQYHGIIRRRQSRAKAEK---L-SRCRKPYMHHSRHLHAMRRPRGSGGRF 186
                           689*********************9...6.888***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.1E-30131189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.713132189IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-24135186IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQNEELLSAP QTPWWNAFGS QPLITESLSG DASDSFPGVK AVIPETEQGV VDKQSSTTLF  60
TFSPGGGKSS KDVPKPHVAF AMQSACFDFG FARPMIYTKH PHVEQYYGVL SAYGSQRSSG  120
RVMLPLKMET EEDGTIYVNE KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR  180
GSGGRFLNTK KVDAATQSKP SNSQSSEVFH PENGTMNSSR EANRPNLSGS EVTSMDYFLS  240
SSVYSPGGMV MPIKWNAATM DIGCCNLNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-14136200572NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846430.0AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288452.10.0nuclear transcription factor Y subunit A-10
RefseqXP_023637202.10.0nuclear transcription factor Y subunit A-10
SwissprotQ8LFU00.0NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLR0H8U30.0R0H8U3_9BRAS; Uncharacterized protein
STRINGBostr.13129s0320.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.20.0nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]