PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0295.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 25461.7 Da PI: 10.204 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++Gd+C+F H Bostr.13129s0295.1.p 38 KSKPCTKFFSTSGCPFGDNCHFLH 61 7789******************** PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 207 | 232 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C++f++ G C yGdrC+FaHg+ Bostr.13129s0295.1.p 207 YKTKICDRFSK-GNCTYGDRCHFAHGE 232 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.084 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.068 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-5 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-8 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 5.1E-11 | 113 | 183 | IPR004087 | K Homology domain |
SuperFamily | SSF54791 | 5.41E-14 | 113 | 183 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.11 | 114 | 178 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-15 | 115 | 182 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.6E-10 | 116 | 180 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.77E-12 | 116 | 178 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-17 | 201 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.028 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-8 | 206 | 232 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-9 | 206 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-10 | 207 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDTRKRGRPE AAASHNSNGE FKRSKQEMES NSTGLGSKSK PCTKFFSTSG CPFGDNCHFL 60 HYVPGGYDAA AQMKNLRPPV AQVSRNMQGS GGAGGRFSGR GDPGLGPVSI FGASATAKIS 120 VDASLAGAII GKGGIHSKQI CRQTGAKLSI KDHERDPNLK IIELDGSFEQ INVASAMVRE 180 LIGRLGSAKK PHGIGGSEGK PHPGSNYKTK ICDRFSKGNC TYGDRCHFAH GEAELRRSGI 240 A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0295.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086759 | 0.0 | AY086759.1 Arabidopsis thaliana clone 27460 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873278.1 | 1e-163 | zinc finger CCCH domain-containing protein 52 isoform X1 | ||||
Swissprot | Q9FG30 | 1e-162 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | D7LZT8 | 1e-162 | D7LZT8_ARALL; KH domain-containing protein | ||||
STRING | Bostr.13129s0295.1.p | 1e-177 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-151 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0295.1.p |
Publications ? help Back to Top | |||
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