PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0292.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 374aa    MW: 41916.9 Da    PI: 6.8739
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32191245155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Bostr.13129s0292.1.p 191 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 245
                           68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.085188248IPR017930Myb domain
SuperFamilySSF466891.43E-17188245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28190246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23191246IPR006447Myb domain, plants
PfamPF002491.3E-8195244IPR001005SANT/Myb domain
PfamPF143794.3E-20275322IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDTINFEFSN ASQGSQLQSQ PQPPQPFNLQ NLNMIQYNQP SSPWTTETFS GFPPFDCSAN  60
QSFPVQCSSS KPYPSSFHPY HHQSSDPTSL DQPVSMVPVQ PLPDQYLKPL YQRSCATDFA  120
AANASSASYS LSFEASQDPQ DLCRSTNNNS NVTHLNFSSS HHQTKQTHPR FASPTSFSTH  180
GGSVAPNCVN KTRIRWTQDL HEKFVECVNR LGGADKATPK AILKLMDSDG LTIFHVKSHL  240
QKYRIAKYMP ESQEGKFEKR ACAKELSQLD TKTGVQIKEA LQLQLDVQRH LHEQLEIQRN  300
LQLRIEEQGK QLKIMMEQQQ KTKESLMKTP EAEASLSLPA SDHTPPPPFL VQDDTEALML  360
TCYGDTQLQS KIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-23191248259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878981.10.0myb family transcription factor PHL5
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLD7LZU10.0D7LZU1_ARALL; Uncharacterized protein
STRINGBostr.13129s0292.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein