PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0103.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 301aa    MW: 31979.4 Da    PI: 7.0339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-081156346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                           W+ e+d  + +a +    +   +W++Ia+ ++ g+  +q+k++++ 
  Bostr.13129s0103.1.p 11 VWSREDDIAFERALANNTDEseeRWEKIAADVP-GKNVEQIKEHYNL 56
                          6*****************99*************.***********96 PP
2Myb_DNA-binding422.2e-13119163347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Bostr.13129s0103.1.p 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                           6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.554762IPR017884SANT domain
SMARTSM007171.1E-7860IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-91066IPR009057Homeodomain-like
PfamPF002493.4E-71156IPR001005SANT/Myb domain
CDDcd001671.47E-71258No hitNo description
Gene3DG3DSA:1.10.10.606.8E-51257IPR009057Homeodomain-like
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466891.29E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17116166IPR006447Myb domain, plants
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
PfamPF002492.7E-11119163IPR001005SANT/Myb domain
CDDcd001678.79E-10119164No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10119162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKNVEQI KEHYNLLVED  60
VTRIESGCVP LPAYGSPEGS NGHAGDEGGS SKKGGNSHAG ESNQGGKSKS DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNADV STPQGPITGQ NNSNNNNTSS TVVAGGGNKS AKQAVPQPPP GPPMYGTPTI  240
GQPVGGPLVS AVGTPVNLPA PPHMAYGVHA APVPGSVVPG APMNMGQMPY NMPRTPTAHR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-13980879RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0103.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529810.0AK352981.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399351.10.0transcription factor SRM1
SwissprotQ9FNN60.0SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A087G5R70.0A0A087G5R7_ARAAL; Uncharacterized protein
TrEMBLE4MWT40.0E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBLV4LAV40.0V4LAV4_EUTSA; Uncharacterized protein
STRINGBostr.13129s0103.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-174MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]