PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 134aa MW: 15202.7 Da PI: 10.0852 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.1e-11 | 55 | 126 | 16 | 90 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 l +p++ ++++ ++ +++l++ +++g +sW+v + r +++ ++++GW++ +++ + gD++ F+l++ +e Bostr.13129s0015.1.p 55 LAIPRSASNDYM--PRVQTMLKIHHPDGkKSWDVGF--RVTKRVDLISGGWRRLCREYPIVFGDTCKFTLIKPHEL 126 789999887775..456679*******999******..89988899***********************9985444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-17 | 36 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-13 | 37 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.77 | 40 | 133 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-13 | 43 | 133 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-8 | 54 | 126 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.01E-8 | 55 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MASNPEFLKC NGERKQESFF KVLNMVSIQR DYAGASSSSI PGFNIFISKS YLIYLAIPRS 60 ASNDYMPRVQ TMLKIHHPDG KKSWDVGFRV TKRVDLISGG WRRLCREYPI VFGDTCKFTL 120 IKPHELLLVV SNP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0015.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452977.1 | 4e-53 | PREDICTED: B3 domain-containing protein REM23-like | ||||
Swissprot | Q9LXE1 | 6e-44 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | D7M272 | 5e-48 | D7M272_ARALL; Predicted protein | ||||
STRING | Bostr.13129s0015.1.p | 8e-96 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09780.1 | 2e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0015.1.p |
Publications ? help Back to Top | |||
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