PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13083s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 378aa MW: 41278.8 Da PI: 5.89 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.3 | 2.4e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Bostr.13083s0065.1.p 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 23 | 1.6e-07 | 46 | 88 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38 +C++++ ++++ C d ++ lC++C +H g H+ Bostr.13083s0065.1.p 46 LICERCNAQPASVRCSDEKVSLCQNCDWVGHDGttstttshHK 88 68*****************************777777777555 PP | |||||||
3 | CCT | 59.5 | 1.2e-20 | 320 | 363 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ Bostr.13083s0065.1.p 320 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 363 99***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.47E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.186 | 43 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.41E-5 | 47 | 76 | No hit | No description |
PROSITE profile | PS51017 | 15.1 | 320 | 362 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-15 | 320 | 362 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 SDEKVSLCQN CDWVGHDGTT STTTSHHKKQ TINCYSGCPS SAELSSIWSF CLDLNMSSAG 120 ESACEQGMGL MTMDEGPGDK SGVQNVNVDQ PGTNSAVQGM DRSSVPENSS LAKELGVCED 180 DFNGNLIMDE VDVALENYEE LFGTAFNSSR YLFEHGGIGS LFEKDEAPEG STQGNSMQQP 240 AVSNNASADS FMTCRTEPII CCSSKPAHSN ISFSGVTGES NAGDFQDCGA SSMKQLSREP 300 QPWCPPTSQD IIASSHATTR NNAVMRYKEK KKARKFDKRV RYVSRKERAD VRRRVKGRFV 360 KSGEAYDYDP MSPARSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13083s0065.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY039957 | 0.0 | AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds. | |||
GenBank | AY142607 | 0.0 | AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493639.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 | ||||
Refseq | XP_010493640.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 | ||||
Refseq | XP_019097594.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | D7MLL3 | 0.0 | D7MLL3_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | Bostr.13083s0065.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13083s0065.1.p |
Publications ? help Back to Top | |||
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