PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13083s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25246.9 Da PI: 8.708 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 65 | 107 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l++a++ G++ W++Iar+++ gRt++ +k++++ Bostr.13083s0032.1.p 65 PFTEEEEEKLLKAHAIQGNR-WASIARKFP-GRTDNAVKNHFHVM 107 79******************.*********.***********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.592 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.09E-13 | 62 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 65 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-14 | 65 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-6 | 77 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
VRDRDRDKLS MEVSGGSKSD ENNKSSCQRG HWRLKEDDKL RKLVAQIRSQ ELEFHCSTFQ 60 GTIRPFTEEE EEKLLKAHAI QGNRWASIAR KFPGRTDNAV KNHFHVMKAR RKREGGASNT 120 SYTLPSLNNL QFGSWRYRTM HTQASFPYDN PDLGSSSVSN DRHGSHLGNT SLVGLDKNHI 180 FHRTLDKSSL EDGLTSNLAD VGGENENDNV TFIYFLGVGL DSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13083s0032.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002885886.1 | 1e-100 | transcription factor MYB117 | ||||
TrEMBL | D7L045 | 2e-98 | D7L045_ARALL; Uncharacterized protein | ||||
STRING | Bostr.13083s0032.1.p | 1e-166 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30350 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33450.1 | 2e-48 | myb domain protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13083s0032.1.p |