PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0423.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 287aa    MW: 33193.3 Da    PI: 6.8589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0423.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-162067148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd ll +++   G g+W++ a+  g++Rt+k+c++rw++yl
  Bostr.12659s0423.1.p 20 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRTGKSCRLRWLNYL 67
                          79********************************************97 PP
2Myb_DNA-binding52.41.2e-1673116146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Bostr.12659s0423.1.p  73 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 116
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3531567IPR017930Myb domain
SuperFamilySSF466891.95E-3018114IPR009057Homeodomain-like
SMARTSM007171.2E-131969IPR001005SANT/Myb domain
PfamPF002491.9E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-222174IPR009057Homeodomain-like
CDDcd001671.35E-92267No hitNo description
PROSITE profilePS5129426.01568122IPR017930Myb domain
SMARTSM007172.6E-1572120IPR001005SANT/Myb domain
PfamPF002491.0E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2375121IPR009057Homeodomain-like
CDDcd001671.64E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSNIMKKRCN GNQDGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAK YLPGRTDNDI KNYWRTRVQK  120
QARQLNIDSN SHKFLEVVRS FWVPRLIHKM KDNSNTNTKA TPDLLGPVLQ NNFSHDSDLC  180
LKNMDFSTSM SVDLNKFSQF MESSDLETTC SMYLDGSRGI SSQCVSEDYS SFPCLEEYMV  240
TTMGNSDILA LQDCHVADST YEEDVTQDPM WNMDDIWQFK EYAHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0423.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499121.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G71e-107MYB62_ARATH; Transcription factor MYB62
TrEMBLR0GKF71e-177R0GKF7_9BRAS; Uncharacterized protein
STRINGBostr.12659s0423.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-173myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]