PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0399.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 354aa    MW: 39520.1 Da    PI: 8.0823
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0399.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-32217272156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Bostr.12659s0399.1.p 217 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 272
                           79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.713214274IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-28215275IPR009057Homeodomain-like
SuperFamilySSF466894.87E-18216275IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-27217272IPR006447Myb domain, plants
PfamPF002492.5E-7219270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLKSGDMDYT HKMKRCHEYV EALEEEQKKI QVFQRELPLC LELVTQAIES CRKELSGSSM  60
SEHVVRSQSE CSERTTSECG GAAVFEEFIP IKWSSSSSDD NDKDGADKIN TNTENNGDKK  120
KSDWLRSVQL WNQSPDPQPK EDQVINKKAT VIEVKRNAGA FQPFQKETAK ADDIDNSQPL  180
KAITPTPTTT SSSTAETVDG GKSEFEQMKQ SQSNNRKQRR CWSPELHRRF LHALQQLGGS  240
HVATPKQIRD LMKVDGLTND EVKSHLQKYR LHTRRPATPA MTNGAGENPQ PRQFMVVEGI  300
WVPSSHDVTN SRVYAPVATQ PPQSSPSGER SSRRCKSPAT SSSTQTPHLL PLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0399.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499096.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FPE80.0HHO3_ARATH; Transcription factor HHO3
TrEMBLR0GQJ30.0R0GQJ3_9BRAS; Uncharacterized protein
STRINGBostr.12659s0399.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-175G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]