PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0396.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 51274.8 Da PI: 4.5492 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.5e-32 | 58 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+P+d+e++++ L+k+ ++g + ++ e+i++v+ i++++P++Lp vk++ + +fF+k+ k+y+tg+rk+r+++ Bostr.12659s0396.1.p 58 LPRGVKFDPSDSEIIWHLLAKSgLAGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKNDGTVSHFFHKAIKAYSTGTRKRRKIHd 143 799************9999988544444543422..33444433345**********.778888999******************8655 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l Bostr.12659s0396.1.p 144 ddfgDVRWHKTGRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192 5655889************.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-37 | 43 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.047 | 58 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-13 | 59 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAGRSWLIDS NRIATKIMSA SASSDPRQVV WKSNPTRHCP NCRHVIDNSD VVDDWPGLPR 60 GVKFDPSDSE IIWHLLAKSG LAGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKNDGTV 120 SHFFHKAIKA YSTGTRKRRK IHDDDFGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA 180 VKTNWVMHQY HLGIEEDEKE GDYVVSKIFY QQPQQQVVKQ GDKAEQEVSE EIVAAMTPKV 240 DPVTPKLVTP EPRHAVRLCS DSHFANDYVI PHGYVTAQEV SLAETSEVMY MEDEVQSIQP 300 NHERPSSAYE PEPEPEPEPG LENGAKEMTD DKEEQEKDED DENQAEEEPT WFDSGSQFIL 360 NSQQLVEALS LCDDLLGSQD REENTNSGSF KNKQPCFADY AHLGTEDFKQ DLEECQKIVL 420 DPSNIELDTP PEFRLSQLEF GSQDSFLAWG TGKTD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0396.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221266 | 0.0 | AK221266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-13-I20. | |||
GenBank | AK228316 | 0.0 | AK228316.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-M01. | |||
GenBank | BT010450 | 0.0 | BT010450.1 Arabidopsis thaliana At1g25580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477912.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A178WLI1 | 0.0 | A0A178WLI1_ARATH; SOG1 | ||||
STRING | Bostr.12659s0396.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0396.1.p |