PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0320.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 372aa    MW: 41900.4 Da    PI: 8.0166
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.5e-37106165261
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++k+l+cprC+s+ntkfCyynny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  Bostr.12659s0320.1.p 106 PDKILPCPRCNSANTKFCYYNNYNVNQPRHFCRNCQRYWTAGGSMRTVPVGSGRRKNKGW 165
                           7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3395163IPR003851Zinc finger, Dof-type
PfamPF027016.7E-31108163IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.444110164IPR003851Zinc finger, Dof-type
PROSITE patternPS013610112148IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSSKIGMSEV RDTPVKLFGW TITSVFSPVS HDPLSSSSPV LPASSSSSSP SLQPHMMNQS  60
ATDNTSLKIS SDLNKESIET SENSDDQHSE ITTTTSEEKQ TDLKKPDKIL PCPRCNSANT  120
KFCYYNNYNV NQPRHFCRNC QRYWTAGGSM RTVPVGSGRR KNKGWVSSDH YLHITSEDTD  180
NYNSSSTKIL SFESSDSLVT ENAKHQSRDA KTNDDFVSQK LNNFQGFLPP QATSPVSPPW  240
PYQYPPNPSF YHMPVYWGCT VPIWSTLEAS ACLGKRKRDE VSHETVRESK DAFVRARLVS  300
EYQNINNEGT RATENHVCYP VSMKHEKTEQ FSFFNGTERK SSNKRFVPET YLNLQANPAA  360
MARSMNFRES M*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065350.0AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866527.10.0dof zinc finger protein DOF1.3
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLD7KQL60.0D7KQL6_ARALL; Dof-type zinc finger domain-containing protein
TrEMBLR0ILX50.0R0ILX5_9BRAS; Uncharacterized protein
STRINGBostr.12659s0320.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.10.0Dof family protein