PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0312.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 418aa    MW: 47482.1 Da    PI: 6.674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.7e-53161431128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d
  Bostr.12659s0312.1.p  16 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKIAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTD 103
                           579***************************.89***************87778999********************************* PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Bostr.12659s0312.1.p 104 RPIYSSeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                           *****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5912174IPR003441NAC domain
PROSITE profilePS5100557.71216174IPR003441NAC domain
PfamPF023651.1E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD  60
LPKIAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPKRFFDSPV SPNDSWAICR IFKKTNTTTL  180
RALSHSFVSS LPPETSTDTI SDQKPSNTYH FSSDKILKTS SHFQFHHENM NTPKTSNSTT  240
PSVATISPFS YLGFTSLDKP TNVLTPVSCL DQQYLTNLFL STQETQPQFP RPTLSNEIPS  300
FLLNTSSDST FLGMGEYTSH IDLSAVLAQE QCPALVSLPQ EYQEKGLEGN GVMKNMRDSN  360
EDHHGHCDTL RFSDFASTID ENHRHHQDLN QNMTLLESYY SSLSSINGDL PVCFSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-551617817169NO APICAL MERISTEM PROTEIN
1ut4_B2e-551617817169NO APICAL MERISTEM PROTEIN
1ut7_A2e-551617817169NO APICAL MERISTEM PROTEIN
1ut7_B2e-551617817169NO APICAL MERISTEM PROTEIN
3swm_A2e-551617820172NAC domain-containing protein 19
3swm_B2e-551617820172NAC domain-containing protein 19
3swm_C2e-551617820172NAC domain-containing protein 19
3swm_D2e-551617820172NAC domain-containing protein 19
3swp_A2e-551617820172NAC domain-containing protein 19
3swp_B2e-551617820172NAC domain-containing protein 19
3swp_C2e-551617820172NAC domain-containing protein 19
3swp_D2e-551617820172NAC domain-containing protein 19
4dul_A2e-551617817169NAC domain-containing protein 19
4dul_B2e-551617817169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0312.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0055080.0AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477805.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLR0GL880.0R0GL88_9BRAS; Uncharacterized protein
STRINGBostr.12659s0312.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]