PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0299.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29586.9 Da    PI: 4.8851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0299.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.51.9e-1770123356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Bostr.12659s0299.1.p  70 KKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 123
                           456899**********************************************99 PP
2HD-ZIP_I/II1223e-3969161193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr++++l++ene L++++++L++
  Bostr.12659s0299.1.p  69 EKKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFENLRDENEVLQTQNQKLQA 157
                           69*************************************************************************************** PP

           HD-ZIP_I/II  90 elke 93 
                           ++++
  Bostr.12659s0299.1.p 158 QIMA 161
                           9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-1954127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-1859125IPR009057Homeodomain-like
PROSITE profilePS5007117.11965125IPR001356Homeobox domain
SMARTSM003892.0E-1768129IPR001356Homeobox domain
CDDcd000863.97E-1470126No hitNo description
PfamPF000468.1E-1570123IPR001356Homeobox domain
PRINTSPR000314.5E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6105121IPR000047Helix-turn-helix motif
PfamPF021832.9E-14125165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNNGLAFF PENFSLQNHQ QEEEDHPQLL QDFHGFLGKR SLMNNVQGFC NLEMNGEEEF  60
SDDGSKMGEK KRRLNMEQLK ALEKNFELGN KLESDRKLEL ARALGLQPRQ IAIWFQNRRA  120
RSKTKQLEKD YDMLKRQFEN LRDENEVLQT QNQKLQAQIM ALKSREPIES INLNKDTEGS  180
CSDRSENISG DIRLPEIDSQ FALGHPPTTT TVQFFQNSSS EQRMVKEENS ISNMFCGIDD  240
QSGFWPWLDQ QHYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0299.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280560.0AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBankAY0849130.0AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBankBT0097270.0BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564268.11e-179homeobox protein 23
SwissprotQ8LFD31e-180ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLA0A178WKR81e-177A0A178WKR8_ARATH; HB23
STRINGBostr.12659s0299.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.10.0homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]