PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0289.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26710.7 Da PI: 5.0559 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.8e-18 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+ ql+ Le+ Fe+++ ++ +++ LA+klgL+ +qV vWFqNrRa++k Bostr.12659s0289.1.p 71 KKRKLTPIQLRLLEDSFEEEKRLDPDRKLWLAEKLGLQPNQVAVWFQNRRARYK 124 56699************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.9 | 2.4e-37 | 71 | 161 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkr+l+ q++lLE+sFeee++L+p+rK la++Lglqp qvavWFqnrRAR+ktkqlE+d+++Lk++y +lk++ + L ++++L+++ Bostr.12659s0289.1.p 71 KKRKLTPIQLRLLEDSFEEEKRLDPDRKLWLAEKLGLQPNQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILYLQNQTLKNK 159 9**************************************************************************************98 PP HD-ZIP_I/II 91 lk 92 ++ Bostr.12659s0289.1.p 160 VA 161 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-19 | 55 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-18 | 69 | 130 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-15 | 71 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-15 | 71 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 73 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.3E-5 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-5 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.2E-14 | 126 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MENSDTDSEV FFWFQNQNKS HSQKAQNQTP SCFPPSSHSA FYGSSSMSNT ETNTVDEEDV 60 CESYMMREIT KKRKLTPIQL RLLEDSFEEE KRLDPDRKLW LAEKLGLQPN QVAVWFQNRR 120 ARYKTKQLEH DCDSLKASYA KLKTDWDILY LQNQTLKNKV ALLKEKLRMQ ENLETQSTEG 180 KKLGKDGSLV KSDNSQYNEE EGLGNQYSFP ELADLGYYYD PTLTASNLTL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARYKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0289.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000348 | 1e-148 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-148 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001185103.1 | 1e-144 | Homeobox-leucine zipper protein family | ||||
Swissprot | P0CJ65 | 1e-145 | ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | A0A178WF45 | 1e-143 | A0A178WF45_ARATH; HB54 | ||||
STRING | Bostr.12659s0289.1.p | 1e-171 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15908 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27045.1 | 1e-148 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0289.1.p |