PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0203.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | YABBY | ||||||||
Protein Properties | Length: 233aa MW: 26013.4 Da PI: 6.4276 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 253.8 | 3e-78 | 13 | 183 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnv 86 ++f+ ++q+C+vqC+fC+til+vsvP+t+l++vvtvrCGhCtsllsvnl+kas +lla+ shlde++kee++++++veee++k+n Bostr.12659s0203.1.p 13 HLFDLPGQICHVQCGFCTTILLVSVPFTTLSMVVTVRCGHCTSLLSVNLMKASfvplHLLASLSHLDEAGKEEVVATDGVEEEAWKVNS 101 78999**********************************************9999999******************************9 PP YABBY 87 ekeesa.stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++e++ +t vss s+nede+v+rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++h++ Bostr.12659s0203.1.p 102 LEKENSpTTLVSS---SDNEDEDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVHNK 183 8776650555555...89***********899***************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-60 | 18 | 182 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-9 | 124 | 179 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-5 | 130 | 179 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.00286 | 138 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTKIPNMTTT LNHLFDLPGQ ICHVQCGFCT TILLVSVPFT TLSMVVTVRC GHCTSLLSVN 60 LMKASFVPLH LLASLSHLDE AGKEEVVATD GVEEEAWKVN SLEKENSPTT LVSSSDNEDE 120 DVSRVYQVVN KPPEKRQRAP SAYNCFIKEE IRRLKAQNPS MAHKEAFSLA AKNWAHFPPV 180 HNKRAASDHC FCEEDNNAIP PCNALEDHEE NNNGFRERKA QRHSIWGKSP FE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0203.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF195047 | 0.0 | AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds. | |||
GenBank | BT026410 | 0.0 | BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498851.1 | 1e-166 | PREDICTED: axial regulator YABBY 4-like isoform X2 | ||||
Swissprot | Q9LDT3 | 1e-156 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1P8APE2 | 1e-154 | A0A1P8APE2_ARATH; Plant-specific transcription factor YABBY family protein | ||||
TrEMBL | Q1PFT2 | 1e-154 | Q1PFT2_ARATH; At1g23420 | ||||
STRING | Bostr.12659s0203.1.p | 1e-174 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-148 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0203.1.p |
Publications ? help Back to Top | |||
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