PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0155.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 170aa    MW: 18325.7 Da    PI: 10.2984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1973135155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpse...ng...kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+W+AeIr+ +    +g   k     r++lg+f taeeAa a+++a+ +l g
  Bostr.12659s0155.1.p  73 KKFRGVRQRP-WGKWAAEIRCGRAhgcGGgnrKGgrpDRIWLGTFETAEEAALAYDNAAIQLIG 135
                           59********.**********7775652267633679**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.6E-341167IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.101.7E-2674142IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1774143IPR016177DNA-binding domain
PfamPF008471.3E-1374135IPR001471AP2/ERF domain
PROSITE profilePS5103221.10174143IPR001471AP2/ERF domain
SMARTSM003801.3E-2874149IPR001471AP2/ERF domain
PRINTSPR003671.8E-117586IPR001471AP2/ERF domain
CDDcd000182.36E-2375142No hitNo description
PRINTSPR003671.8E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKRIVRISFT DMEATDSSSS EEESPPSRRR GKKLVKEIVI DPSDSAEVGK TRFKIRIPAR  60
FLAAKTTTTG NKKKFRGVRQ RPWGKWAAEI RCGRAHGCGG GNRKGGRPDR IWLGTFETAE  120
EAALAYDNAA IQLIGPDAPT NFGCPDVEPP AVKQDSDAGA SAKTPDSPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17741421471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0155.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAF0006577e-95AF000657.1 Arabidopsis thaliana BAC F19G10, complete sequence.
GenBankAY0625417e-95AY062541.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankAY0870647e-95AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence.
GenBankAY0933367e-95AY093336.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankCP0026847e-95CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866096.15e-81ethylene-responsive transcription factor ERF069
SwissprotQ8W4I54e-73ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLV4KWU56e-78V4KWU5_EUTSA; Uncharacterized protein
STRINGBostr.12659s0155.1.p1e-120(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.12e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]