PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 328aa MW: 37598.1 Da PI: 4.9532 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6.1e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l +s Bostr.12659s0064.1.p 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSTSNRLSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 14.7 | 1.3e-06 | 124 | 194 | 9 | 79 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +k ++l++e+ +L++++++ ++e+ ++ + + s+++ + e+qL + l+++ +++++ll ++++ Bostr.12659s0064.1.p 124 SDVEKIQELEREICRLRQQVQMAEEELMRYEPDPVRFTSMEDYEVCEKQLLDTLTHVLQRRDHLLSSHLSS 194 456789***********************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-28 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.62E-34 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 3.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFST SNRLSLFSGK 60 TRIEDVFTRF INLPKQERES AYYFPDHSRR PDIQSKECLL RILQQLKTEN DIALQNTNPA 120 AINSDVEKIQ ELEREICRLR QQVQMAEEEL MRYEPDPVRF TSMEDYEVCE KQLLDTLTHV 180 LQRRDHLLSS HLSSYEASTM QQSIAGPFVN DVIEGWLPES GHNQAHLFDA SAHSNQLREL 240 SSAMYEPLLQ GSSSSSNQNN MSECYVTNHN GEMFPEWAQT NAFASMQQQH GGMGPSIEEM 300 MPAHQVDIPA VTTETQADRE VSDYETR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6byy_A | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_B | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_C | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_D | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_A | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_B | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_C | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_D | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6c9l_A | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0064.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056457 | 0.0 | DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498675.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 0.0 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D7KL04 | 0.0 | D7KL04_ARALL; Predicted protein | ||||
STRING | Bostr.12659s0064.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 0.0 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0064.1.p |
Publications ? help Back to Top | |||
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