PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12302s0136.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 343aa    MW: 38815.8 Da    PI: 8.6194
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12302s0136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36351272103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+
  Bostr.12302s0136.1.p  35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGE 114
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+k++
  Bostr.12302s0136.1.p 115 KHLLCEIHRRKTS 127
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-6131124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAMMVENSYG GYGGGGGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT  60
FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE  120
IHRRKTSQMI PQQHSPFMSH HHAPPQIPFS GGTFFPLPPR VTTPEDDHYW CDSPPSRPRV  180
IPPPTTIDTA AQVTALSEDN ERLRRSNTVL MSELAHMKKL YNDIIYFVQN HVKPVAPSNS  240
YLSSFLQKQQ PPPTLDYYNT ATVNATNLHA LNSSPPTSQS SITVLEDDTN HDQSNMRKTK  300
LFGVSLPSSK KRLHHFSDQS SKTRLVLDKS DLALNLMTAS TR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223112717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12302s0136.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934990.0AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891331.10.0heat stress transcription factor B-4
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD7KPW30.0D7KPW3_ARALL; Uncharacterized protein
STRINGBostr.12302s0136.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4